Revisiting hydrophobic mismatch with free energy simulation studies of transmembrane helix tilt and rotation
about
Modeling transmembrane domain dimers/trimers of plexin receptors: implications for mechanisms of signal transmission across the membraneConformational Changes in the Epidermal Growth Factor Receptor: Role of the Transmembrane Domain Investigated by Coarse-Grained MetaDynamics Free Energy CalculationsHydrophobic Matching Controls the Tilt and Stability of the Dimeric Platelet-derived Growth Factor Receptor (PDGFR) Transmembrane SegmentForce transduction and lipid binding in MscL: a continuum-molecular approachAggregation of model membrane proteins, modulated by hydrophobic mismatch, membrane curvature, and protein class.NMR-based simulation studies of Pf1 coat protein in explicit membranesEnhanced Sampling of Coarse-Grained Transmembrane-Peptide Structure Formation from Hydrogen-Bond Replica Exchange.Membrane environment modulates the pKa values of transmembrane helicesE. coli outer membrane and interactions with OmpLA.Transferring the PRIMO Coarse-Grained Force Field to the Membrane Environment: Simulations of Membrane Proteins and Helix-Helix Association.On the combined analysis of ²H and ¹⁵N/¹H solid-state NMR data for determination of transmembrane peptide orientation and dynamicsCholesterol modulates the membrane effects and spatial organization of membrane-penetrating ligands for G-protein coupled receptorsTransmembrane helix orientation and dynamics: insights from ensemble dynamics with solid-state NMR observables.Solid-state NMR ensemble dynamics as a mediator between experiment and simulationDistinct mechanisms regulating mechanical force-induced Ca²⁺ signals at the plasma membrane and the ER in human MSCs.Solid-State NMR-Restrained Ensemble Dynamics of a Membrane Protein in Explicit MembranesInteractions of amino acid side-chain analogs within membrane environments.Influence of hydrophobic mismatch on structures and dynamics of gramicidin a and lipid bilayers.Robust driving forces for transmembrane helix packing.Prediction, refinement, and persistency of transmembrane helix dimers in lipid bilayers using implicit and explicit solvent/lipid representations: microsecond molecular dynamics simulations of ErbB1/B2 and EphA1.Study on the Application of the Combination of TMD Simulation and Umbrella Sampling in PMF Calculation for Molecular Conformational Transitions.Assessing smectic liquid-crystal continuum models for elastic bilayer deformations.More than the sum of its parts: coarse-grained peptide-lipid interactions from a simple cross-parametrization.Probing the U-shaped conformation of caveolin-1 in a bilayer.Response of GWALP transmembrane peptides to changes in the tryptophan anchor positions.Challenges in structural approaches to cell modeling.Heterogeneous dielectric generalized Born model with a van der Waals term provides improved association energetics of membrane-embedded transmembrane helices.Dynamic Heterogeneous Dielectric Generalized Born (DHDGB): An implicit membrane model with a dynamically varying bilayer thickness.The Transmembrane Helix Tilt May Be Determined by the Balance between Precession Entropy and Lipid Perturbation.Characterizing Residue-Bilayer Interactions Using Gramicidin A as a Scaffold and Tryptophan Substitutions as ProbesHow Tolerant are Membrane Simulations with Mismatch in Area per Lipid between Leaflets?Orientation of fluorescent lipid analogue BODIPY-PC to probe lipid membrane properties: insights from molecular dynamics simulationsLocalization and Ordering of Lipids Around Aquaporin-0: Protein and Lipid Mobility Effects.An investigation of the effect of membrane curvature on transmembrane-domain dependent protein sorting in lipid bilayers.Membrane interface composition drives the structure and the tilt of the single transmembrane helix protein PMP1: MD studiesInsights into the photoprotective switch of the major light-harvesting complex II (LHCII): a preserved core of arginine-glutamate interlocked helices complemented by adjustable loops.Open and closed conformations of the isolated transmembrane domain of death receptor 5 support a new model of activation.Cholesterol driven alteration of the conformation and dynamics of phospholamban in model membranes.Molecular dynamics simulation of human serum paraoxonase 1 in DPPC bilayer reveals a critical role of transmembrane helix H1 for HDL association.Bilayer-thickness-mediated interactions between integral membrane proteins.
P2860
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P2860
Revisiting hydrophobic mismatch with free energy simulation studies of transmembrane helix tilt and rotation
description
2010 nî lūn-bûn
@nan
2010 թուականի Յուլիսին հրատարակուած գիտական յօդուած
@hyw
2010 թվականի հուլիսին հրատարակված գիտական հոդված
@hy
2010年の論文
@ja
2010年論文
@yue
2010年論文
@zh-hant
2010年論文
@zh-hk
2010年論文
@zh-mo
2010年論文
@zh-tw
2010年论文
@wuu
name
Revisiting hydrophobic mismatc ...... mbrane helix tilt and rotation
@ast
Revisiting hydrophobic mismatc ...... mbrane helix tilt and rotation
@en
Revisiting hydrophobic mismatc ...... mbrane helix tilt and rotation
@nl
type
label
Revisiting hydrophobic mismatc ...... mbrane helix tilt and rotation
@ast
Revisiting hydrophobic mismatc ...... mbrane helix tilt and rotation
@en
Revisiting hydrophobic mismatc ...... mbrane helix tilt and rotation
@nl
prefLabel
Revisiting hydrophobic mismatc ...... mbrane helix tilt and rotation
@ast
Revisiting hydrophobic mismatc ...... mbrane helix tilt and rotation
@en
Revisiting hydrophobic mismatc ...... mbrane helix tilt and rotation
@nl
P2860
P921
P3181
P1433
P1476
Revisiting hydrophobic mismatc ...... mbrane helix tilt and rotation
@en
P2093
Taehoon Kim
P2860
P304
P3181
P356
10.1016/J.BPJ.2010.04.015
P407
P50
P577
2010-07-07T00:00:00Z