Coarse-grained modeling of large RNA molecules with knowledge-based potentials and structural filters - Test2 - elhamkhani - TriplyDB

Coarse-grained modeling of large RNA molecules with knowledge-based potentials and structural filters

Coarse-grained modeling of large RNA molecules with knowledge-based potentials and structural filters

http://www.wikidata.org/entity/Q24647503

about

Tfold: efficient in silico prediction of non-coding RNA secondary structures Automated 3D structure composition for large RNAs Turning limited experimental information into 3D models of RNA Structure Prediction: New Insights into Decrypting Long Noncoding RNAs Small molecule compounds targeting miRNAs for cancer therapy NMR structure of a 4 x 4 nucleotide RNA internal loop from an R2 retrotransposon: Identification of a three purine-purine sheared pair motif and comparison to MC-SYM predictions On docking, scoring and assessing protein-DNA complexes in a rigid-body framework Evolutionary evidence for alternative structure in RNA sequence co-variation A conditional random fields method for RNA sequence-structure relationship modeling and conformation sampling Correlation of RNA secondary structure statistics with thermodynamic stability and applications to folding.3D RNA and Functional Interactions from Evolutionary Couplings Quantifying the relationship between sequence and three-dimensional structure conservation in RNA.RNA and protein 3D structure modeling: similarities and differences.Fully differentiable coarse-grained and all-atom knowledge-based potentials for RNA structure evaluation.A mechanism for S-adenosyl methionine assisted formation of a riboswitch conformation: a small molecule with a strong arm RCrane: semi-automated RNA model building Determining RNA three-dimensional structures using low-resolution data.Visualizing the ai5γ group IIB intron Predicting RNA 3D structure using a coarse-grain helix-centered model Modeling the structure of RNA molecules with small-angle X-ray scattering data.Characterizing RNA ensembles from NMR data with kinematic models.Predicting helical topologies in RNA junctions as tree graphs.Modeling RNA loops using sequence homology and geometric constraints Assemble: an interactive graphical tool to analyze and build RNA architectures at the 2D and 3D levels RNA structure determination using SAXS data.Predicting loop-helix tertiary structural contacts in RNA pseudoknots.Visualizing single-stranded nucleic acids in solution.Using sequence signatures and kink-turn motifs in knowledge-based statistical potentials for RNA structure prediction.Predicting RNA structure by multiple template homology modeling.Theory and Modeling of RNA Structure and Interactions with Metal Ions and Small Molecules.On the significance of an RNA tertiary structure prediction.Fast flexible modeling of RNA structure using internal coordinates.RNA structural motifs that entail hydrogen bonds involving sugar-phosphate backbone atoms of RNA.Advances in RNA structure analysis by chemical probing.A unified coarse-grained model of biological macromolecules based on mean-field multipole-multipole interactions.Computational modeling of RNA 3D structures, with the aid of experimental restraints.The ligand-free state of the TPP riboswitch: a partially folded RNA structure.Dynamic energy landscapes of riboswitches help interpret conformational rearrangements and function.Discrete RNA libraries from pseudo-torsional space Computational identification of RNA functional determinants by three-dimensional quantitative structure-activity relationships.

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P2860

Coarse-grained modeling of large RNA molecules with knowledge-based potentials and structural filters

http://www.wikidata.org/entity/Q24647503

description

2009 nî lūn-bûn

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2009 թուականի Փետրուարին հրատարակուած գիտական յօդուած

@hyw

2009 թվականի փետրվարին հրատարակված գիտական հոդված

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2009年の論文

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2009年論文

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2009年論文

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2009年論文

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2009年論文

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2009年論文

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2009年论文

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Coarse-grained modeling of lar ...... entials and structural filters

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Coarse-grained modeling of lar ...... entials and structural filters

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Coarse-grained modeling of lar ...... entials and structural filters

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Magdalena A Jonikas

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Randall J Radmer

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Samuel Pearlman

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P2860

Mfold web server for nucleic acid folding and hybridization prediction

An mRNA structure that controls gene expression by binding FMN

Ribonuclease P: an enzyme with an essential RNA component

Regulation of lysine biosynthesis and transport genes in bacteria: yet another RNA riboswitch?

DNAse footprinting: a simple method for the detection of protein-DNA binding specificity

Automated de novo prediction of native-like RNA tertiary structures

The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

Crystal structure of the ribosome at 5.5 A resolution

Crystal structure of a group I ribozyme domain: principles of RNA packing

Protein structure prediction and structural genomics

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scholarly article

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4110064

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10.1261/RNA.1270809

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2

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15

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Alain Laederach

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2009-02-01T00:00:00Z

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23788998

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19144906

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2648710

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