The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts - Test2 - elhamkhani - TriplyDB

The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts

The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts

http://www.wikidata.org/entity/Q24649061

about

The Genomic HyperBrowser: inferential genomics at the sequence level Systems medicine: the future of medical genomics and healthcare Constraint Based Modeling Going Multicellular TargetMine, an integrated data warehouse for candidate gene prioritisation and target discovery Published and perished? The influence of the searched protein database on the long-term storage of proteomics data Prediction of protein-destabilizing polymorphisms by manual curation with protein structure.GATExplorer: genomic and transcriptomic explorer; mapping expression probes to gene loci, transcripts, exons and ncRNAs Distribution and effects of nonsense polymorphisms in human genes.QuantPrime--a flexible tool for reliable high-throughput primer design for quantitative PCR.H-InvDB in 2009: extended database and data mining resources for human genes and transcripts PhosSNP for systematic analysis of genetic polymorphisms that influence protein phosphorylation.Mining mammalian transcript data for functional long non-coding RNAs.A comprehensive survey of human polymorphisms at conserved splice dinucleotides and its evolutionary relationship with alternative splicing.H-DBAS: human-transcriptome database for alternative splicing: update 2010 PathEx: a novel multi factors based datasets selector web tool.Mining Affymetrix microarray data for long non-coding RNAs: altered expression in the nucleus accumbens of heroin abusers.Genomics and bioinformatics resources for crop improvement.GWAS and drug targets.Brefeldin A-inhibited guanine nucleotide-exchange protein 3 (BIG3) is predicted to interact with its partner through an ARM-type α-helical structure Comparative genome analysis of three eukaryotic parasites with differing abilities to transform leukocytes reveals key mediators of Theileria-induced leukocyte transformation.LncRBase: an enriched resource for lncRNA information.PCDq: human protein complex database with quality index which summarizes different levels of evidences of protein complexes predicted from h-invitational protein-protein interactions integrative dataset.Large-scale collection and analysis of full-length cDNAs from Brachypodium distachyon and integration with Pooideae sequence resources.Assessing the impact of human genome annotation choice on RNA-seq expression estimates.Identification and Validation of Evolutionarily Conserved Unusually Short Pre-mRNA Introns in the Human Genome.Systematic transcriptome analysis reveals tumor-specific isoforms for ovarian cancer diagnosis and therapy Evola: Ortholog database of all human genes in H-InvDB with manual curation of phylogenetic trees Trans-natural antisense transcripts including noncoding RNAs in 10 species: implications for expression regulation Low conservation and species-specific evolution of alternative splicing in humans and mice: comparative genomics analysis using well-annotated full-length cDNAs.VarySysDB: a human genetic polymorphism database based on all H-InvDB transcripts Hyperlink Management System and ID Converter System: enabling maintenance-free hyperlinks among major biological databases.Isoform discovery by targeted cloning, 'deep-well' pooling and parallel sequencing.Navigating the dynamic landscape of long noncoding RNA and protein-coding gene annotations in GENCODE G-compass: a web-based comparative genome browser between human and other vertebrate genomes.Identification of candidate long noncoding RNAs associated with left ventricular hypertrophy.Computational approaches to selecting and optimising targets for structural biology.Consequences of the discontinuation of the International Protein Index (IPI) database and its substitution by the UniProtKB "complete proteome" sets.Genome-wide computational identification and manual annotation of human long noncoding RNA genes.Prediction of carbohydrate-binding proteins from sequences using support vector machines Selection pressure on human STR loci and its relevance in repeat expansion disease.

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The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts

http://www.wikidata.org/entity/Q24649061

description

2008 nî lūn-bûn

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2008 թուականի Յունուարին հրատարակուած գիտական յօդուած

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2008 թվականի հունվարին հրատարակված գիտական հոդված

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2008年の論文

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2008年論文

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2008年論文

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2008年論文

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2008年论文

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Nucleic Acids Research

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Aiko Takahashi

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Aki Hashizume

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Akihiro Matsuya

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Akiko Ogura Noda

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Andreas Osanger

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Asami Nozaki

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Chie Motono

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Chisato Yamasaki

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Craig Gough

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Eleanor Whitfield

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.

HUGE: a database for human large proteins identified in the Kazusa cDNA sequencing project

Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs

WoLF PSORT: protein localization predictor

The Human Anatomic Gene Expression Library (H-ANGEL), the H-Inv integrative display of human gene expression across disparate technologies and platforms

Integrative annotation of 21,037 human genes validated by full-length cDNA clones

Prediction of complete gene structures in human genomic DNA

Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

The transcriptional landscape of the mammalian genome

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D793-9

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2756361

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10.1093/NAR/GKM999

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Database issue

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36

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Yoshihide Hayashizaki

Charles Auffray

Jean Thierry-Mieg

Danielle Thierry-Mieg

Laurens G Wilming

Claire O'Donovan

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2008-01-01T00:00:00Z

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5758413

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18089548

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