Transterm: a database to aid the analysis of regulatory sequences in mRNAs - Test2 - elhamkhani - TriplyDB

Transterm: a database to aid the analysis of regulatory sequences in mRNAs

Transterm: a database to aid the analysis of regulatory sequences in mRNAs

http://www.wikidata.org/entity/Q24655920

about

NMR solution structure and function of the C-terminal domain of eukaryotic class 1 polypeptide chain release factor New families of human regulatory RNA structures identified by comparative analysis of vertebrate genomes Tuning the engine: an introduction to resources on post-transcriptional regulation of gene expression A guide for functional analysis of BRCA1 variants of uncertain significance Messenger RNA-based vaccines: progress, challenges, applications Identification of evolutionarily conserved non-AUG-initiated N-terminal extensions in human coding sequences Computational identification of new structured cis-regulatory elements in the 3'-untranslated region of human protein coding genes Global or local? Predicting secondary structure and accessibility in mRNAs Mining Functional Elements in Messenger RNAs: Overview, Challenges, and Perspectives DMAP: differential methylation analysis package for RRBS and WGBS data.Genes and pathways for CO2 fixation in the obligate, chemolithoautotrophic acidophile, Acidithiobacillus ferrooxidans, carbon fixation in A. ferrooxidans.Application of sorting and next generation sequencing to study 5΄-UTR influence on translation efficiency in Escherichia coli Scan for Motifs: a webserver for the analysis of post-transcriptional regulatory elements in the 3' untranslated regions (3' UTRs) of mRNAs Translation Initiation from Conserved Non-AUG Codons Provides Additional Layers of Regulation and Coding Capacity.Synonymous but not the same: the causes and consequences of codon bias High-throughput proteogenomics of Ruegeria pomeroyi: seeding a better genomic annotation for the whole marine Roseobacter clade.Broad-specificity mRNA-rRNA complementarity in efficient protein translation.AURA: Atlas of UTR Regulatory Activity.Ribosomal readthrough at a short UGA stop codon context triggers dual localization of metabolic enzymes in Fungi and animals.Prospects for inhibiting the post-transcriptional regulation of gene expression in hepatitis B virus.In silico estimation of translation efficiency in human cell lines: potential evidence for widespread translational control The stringency of start codon selection in the filamentous fungus Neurospora crassa.SeqDepot: streamlined database of biological sequences and precomputed features Nonsense codon suppression in fission yeast due to mutations of tRNA(Ser.11) and translation release factor Sup35 (eRF3).Downregulation of HuR as a new mechanism of doxorubicin resistance in breast cancer cells.ImiRP: a computational approach to microRNA target site mutation RNA-Seq of Borrelia burgdorferi in Multiple Phases of Growth Reveals Insights into the Dynamics of Gene Expression, Transcriptome Architecture, and Noncoding RNAs Hyper conserved elements in vertebrate mRNA 3'-UTRs reveal a translational network of RNA-binding proteins controlled by HuR.Evidence for context-dependent complementarity of non-Shine-Dalgarno ribosome binding sites to Escherichia coli rRNA Rice MEL2, the RNA recognition motif (RRM) protein, binds in vitro to meiosis-expressed genes containing U-rich RNA consensus sequences in the 3'-UTR.Complete genome sequence of the giant virus OBP and comparative genome analysis of the diverse ΦKZ-related phages.The folding of 5'-UTR human G-quadruplexes possessing a long central loop A meta-analysis of single base-pair substitutions in translational termination codons ('nonstop' mutations) that cause human inherited disease Lytic infection of Lactococcus lactis by bacteriophages Tuc2009 and c2 triggers alternative transcriptional host responses.5'-UTR G-quadruplex structures acting as translational repressors.Identifying functional annotation for noncoding genomic sequences.Maturation-associated Dbf4 expression is essential for mouse zygotic DNA replication.Eukaryotic translational termination efficiency is influenced by the 3' nucleotides within the ribosomal mRNA channel.Optimization of mRNA design for protein expression in the crustacean Daphnia magna.Translational autoregulation of BZW1 and BZW2 expression by modulating the stringency of start codon selection.

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Transterm: a database to aid the analysis of regulatory sequences in mRNAs

http://www.wikidata.org/entity/Q24655920

description

2009 nî lūn-bûn

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2009 թուականի Յունուարին հրատարակուած գիտական յօդուած

@hyw

2009 թվականի հունվարին հրատարակված գիտական հոդված

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2009年の論文

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2009年論文

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2009年論文

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2009年論文

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2009年論文

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2009年論文

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2009年论文

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name

Transterm: a database to aid the analysis of regulatory sequences in mRNAs

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Transterm: a database to aid the analysis of regulatory sequences in mRNAs

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Transterm: a database to aid the analysis of regulatory sequences in mRNAs

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Transterm: a database to aid the analysis of regulatory sequences in mRNAs

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Transterm: a database to aid the analysis of regulatory sequences in mRNAs

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Transterm: a database to aid the analysis of regulatory sequences in mRNAs

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prefLabel

Transterm: a database to aid the analysis of regulatory sequences in mRNAs

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Transterm: a database to aid the analysis of regulatory sequences in mRNAs

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Transterm: a database to aid the analysis of regulatory sequences in mRNAs

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Nucleic Acids Research

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Transterm: a database to aid the analysis of regulatory sequences in mRNAs

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Augustine Chen

http://www.w3.org/2001/XMLSchema#string

Grant H Jacobs

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Peter A Stockwell

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Stewart G Stevens

http://www.w3.org/2001/XMLSchema#string

P2860

IRESite: the database of experimentally verified IRES structures (www.iresite.org).

miRBase: microRNA sequences, targets and gene nomenclature

Rfam: annotating non-coding RNAs in complete genomes

UTRdb and UTRsite: a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs

Translation of the first upstream ORF in the hepatitis B virus pregenomic RNA modulates translation at the core and polymerase initiation codons

Combining SELEX with quantitative assays to rapidly obtain accurate models of protein-DNA interactions.

Transterm--extended search facilities and improved integration with other databases.

Initiation of translation in prokaryotes and eukaryotes

Comparison of characteristics and function of translation termination signals between and within prokaryotic and eukaryotic organisms

A systematic analysis of disease-associated variants in the 3' regulatory regions of human protein-coding genes II: the importance of mRNA secondary structure in assessing the functionality of 3' UTR variants.

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D72-6

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2051827

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10.1093/NAR/GKN763

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Database issue

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37

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Michael A. Black

Christopher Brown

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2008-11-04T00:00:00Z

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23451881

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18984623

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2686486

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