Computational analysis of tissue-specific combinatorial gene regulation: predicting interaction between transcription factors in human tissues - Test2 - elhamkhani - TriplyDB

Computational analysis of tissue-specific combinatorial gene regulation: predicting interaction between transcription factors in human tissues

Computational analysis of tissue-specific combinatorial gene regulation: predicting interaction between transcription factors in human tissues

http://www.wikidata.org/entity/Q24674713

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The developmental expression dynamics of Drosophila melanogaster transcription factors Eukaryotic genomes may exhibit up to 10 generic classes of gene promoters An atlas of combinatorial transcriptional regulation in mouse and man Computational structural analysis: multiple proteins bound to DNA Evolutionary Footprints of Short Tandem Repeats in Avian Promoters Distance and helical phase dependence of synergistic transcription activation in cis-regulatory module Large-scale transcriptome comparison of sunflower genes responsive to Verticillium dahliae Identification of tissue-specific cis-regulatory modules based on interactions between transcription factors.Meta-analysis of nasopharyngeal carcinoma microarray data explores mechanism of EBV-regulated neoplastic transformation Functional integrative levels in the human interactome recapitulate organ organization.Prediction and validation of protein-protein interactors from genome-wide DNA-binding data using a knowledge-based machine-learning approach Two different classes of co-occurring motif pairs found by a novel visualization method in human promoter regions Physiology, pathology and relatedness of human tissues from gene expression meta-analysis.TiGER: a database for tissue-specific gene expression and regulation GBNet: deciphering regulatory rules in the co-regulated genes using a Gibbs sampler enhanced Bayesian network approach Predicting eukaryotic transcriptional cooperativity by Bayesian network integration of genome-wide data Identification of interacting transcription factors regulating tissue gene expression in human Functional annotation of novel lineage-specific genes using co-expression and promoter analysis Comparative expression profiling of testis-enriched genes regulated during the development of spermatogonial cells.A benchmark of gene expression tissue-specificity metrics.Novel primate-specific genes, RMEL 1, 2 and 3, with highly restricted expression in melanoma, assessed by new data mining tool Microarray data integration for genome-wide analysis of human tissue-selective gene expression Simplified method to predict mutual interactions of human transcription factors based on their primary structure.Construction and analysis of an integrated regulatory network derived from high-throughput sequencing data.Computational analysis of tissue-specific gene networks: application to murine retinal functional studies.Predicting tissue specific cis-regulatory modules in the human genome using pairs of co-occurring motifs.Detection of interacting transcription factors in human tissues using predicted DNA binding affinity.Inferring high-confidence human protein-protein interactions Unique reporter-based sensor platforms to monitor signalling in cells.Plasma Triglyceride Levels May Be Modulated by Gene Expression of IQCJ, NXPH1, PHF17 and MYB in Humans Characterization of regulatory features of housekeeping and tissue-specific regulators within tissue regulatory networks.Discrimination of the expression of paralogous microRNA precursors that share the same major mature form Ceruloplasmin is a novel adipokine which is overexpressed in adipose tissue of obese subjects and in obesity-associated cancer cells.Predicted trans-acting siRNAs in the human brain.Cooperative transcription factor associations discovered using regulatory variation cDREM: inferring dynamic combinatorial gene regulation.Identification of the avian RBP7 gene as a new adipose-specific gene and RBP7 promoter-driven GFP expression in adipose tissue of transgenic quail.Vision from next generation sequencing: multi-dimensional genome-wide analysis for producing gene regulatory networks underlying retinal development, aging and disease Identification of co-occurring transcription factor binding sites from DNA sequence using clustered position weight matrices.Isoform diversity and its importance for axon regeneration.

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Computational analysis of tissue-specific combinatorial gene regulation: predicting interaction between transcription factors in human tissues

http://www.wikidata.org/entity/Q24674713

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Donald J Zack

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Jiang Qian

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Jimmy Lin

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Xueping Yu

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P2860

Towards a proteome-scale map of the human protein–protein interaction network

A Gene Map of the Human Genome

Gene ontology: tool for the unification of biology

Human myocyte-specific enhancer factor 2 comprises a group of tissue-restricted MADS box transcription factors

Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome

Multiple roles for the MyoD basic region in transmission of transcriptional activation signals and interaction with MEF2

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes.

DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions

Gene expression profiling reveals molecularly and clinically distinct subtypes of glioblastoma multiforme

An ORFeome-based analysis of human transcription factor genes and the construction of a microarray to interrogate their expression

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