Homology modeling using parametric alignment ensemble generation with consensus and energy-based model selection
about
Template-based protein structure modelingThe Protein Model Portal--a comprehensive resource for protein structure and model informationHigh-resolution structure prediction and the crystallographic phase problemFractured genes: a novel genomic arrangement involving new split inteins and a new homing endonuclease familyThe Protein Model PortalThe restriction fold turns to the dark side: a bacterial homing endonuclease with a PD-(D/E)-XK motifComputational methods in drug discoverySynergy of NMR, Computation, and X-Ray Crystallography for Structural BiologyCrystal structure of the nucleotide-binding domain of mortalin, the mitochondrial Hsp70 chaperoneA chaperone cascade sorts proteins for posttranslational membrane insertion into the endoplasmic reticulum.Functional interaction with filamin A and intracellular Ca2+ enhance the surface membrane expression of a small-conductance Ca2+-activated K+ (SK2) channelPSPP: a protein structure prediction pipeline for computing clustersType VI secretion system translocates a phage tail spike-like protein into target cells where it cross-links actinStimulus-specific modulation of the cation channel TRPV4 by PACSIN 3The structural basis of substrate recognition by the eukaryotic chaperonin TRiC/CCTComputational modeling of laminin N-terminal domains using sparse distance constraints from disulfide bonds and chemical cross-linkingBorrelia burgdorferi locus BB0795 encodes a BamA orthologue required for growth and efficient localization of outer membrane proteinsProtein structure prediction by pro-Sp3-TASSER.Hybrid approaches: applying computational methods in cryo-electron microscopyPerformance of the Pro-sp3-TASSER server in CASP8Structure prediction for CASP8 with all-atom refinement using Rosetta.Clustering and percolation in protein loop structures.BCL::contact-low confidence fold recognition hits boost protein contact prediction and de novo structure determination.TASSER_low-zsc: an approach to improve structure prediction using low z-score-ranked templates.Using structure to explore the sequence alignment space of remote homologs.Template-based protein structure modeling using TASSER(VMT.).Automated protein structure modeling with SWISS-MODEL Workspace and the Protein Model Portal.Evolutionary information hidden in a single protein structure.An all-atom model of the structure of human copper transporter 1.In vivo oligomerization of the F conjugative coupling protein TraD.A score of the ability of a three-dimensional protein model to retrieve its own sequence as a quantitative measure of its quality and appropriatenessQuantifying variances in comparative RNA secondary structure predictionHomology modeling, molecular dynamics, and site-directed mutagenesis study of AlkB human homolog 1 (ALKBH1)Cold adaptation, ca2+ dependency and autolytic stability are related features in a highly active cold-adapted trypsin resistant to autoproteolysis engineered for biotechnological applications.Finding homes for orphan cytochrome P450s: CYP4V2 and CYP4F22 in disease states.Identification of amino acid determinants in CYP4B1 for optimal catalytic processing of 4-ipomeanol.The PS1 hairpin of Mcm3 is essential for viability and for DNA unwinding in vitro.Reliable cell cycle commitment in budding yeast is ensured by signal integration.Efficient representation of uncertainty in multiple sequence alignments using directed acyclic graphs.Factor VIII Interacts with the Endocytic Receptor Low-density Lipoprotein Receptor-related Protein 1 via an Extended Surface Comprising "Hot-Spot" Lysine Residues.
P2860
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P2860
Homology modeling using parametric alignment ensemble generation with consensus and energy-based model selection
description
2006 nî lūn-bûn
@nan
2006 թուականին հրատարակուած գիտական յօդուած
@hyw
2006 թվականին հրատարակված գիտական հոդված
@hy
2006年の論文
@ja
2006年論文
@yue
2006年論文
@zh-hant
2006年論文
@zh-hk
2006年論文
@zh-mo
2006年論文
@zh-tw
2006年论文
@wuu
name
Homology modeling using parame ...... d energy-based model selection
@ast
Homology modeling using parame ...... d energy-based model selection
@en
Homology modeling using parame ...... d energy-based model selection
@nl
type
label
Homology modeling using parame ...... d energy-based model selection
@ast
Homology modeling using parame ...... d energy-based model selection
@en
Homology modeling using parame ...... d energy-based model selection
@nl
prefLabel
Homology modeling using parame ...... d energy-based model selection
@ast
Homology modeling using parame ...... d energy-based model selection
@en
Homology modeling using parame ...... d energy-based model selection
@nl
P2860
P356
P1476
Homology modeling using parame ...... d energy-based model selection
@en
P2093
Dylan Chivian
P2860
P356
10.1093/NAR/GKL480
P407
P50
P577
2006-01-01T00:00:00Z