Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies - Test2 - elhamkhani - TriplyDB

Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies

Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies

http://www.wikidata.org/entity/Q24675376

about

Differential detection of dual traps improves the spatial resolution of optical tweezers Far-from-equilibrium measurements of thermodynamic length Direct observation of a force-induced switch in the anisotropic mechanical unfolding pathway of a protein.Protein folding at single-molecule resolution.Mathematics and biology: a Kantian view on the history of pattern formation theory.High-resolution optical tweezers for single-molecule manipulation.Measurement of the effect of monovalent cations on RNA hairpin stability.Force unfolding kinetics of RNA using optical tweezers. II. Modeling experiments.Direct evidence for three-dimensional off-axis trapping with single Laguerre-Gaussian beam.Characterizing rare fluctuations in soft particulate flows.Bayesian estimates of free energies from nonequilibrium work data in the presence of instrument noise.Determination of thermodynamics and kinetics of RNA reactions by force.Comparative energy measurements in single molecule interactions.Velocity convergence of free energy surfaces from single-molecule measurements using Jarzynski's equality.Experimental and computational characterization of biological liquid crystals: a review of single-molecule bioassays Prediction of RNA multiloop and pseudoknot conformations from a lattice-based, coarse-grain tertiary structure model.Density-dependent analysis of nonequilibrium paths improves free energy estimates Full distance-resolved folding energy landscape of one single protein molecule.Protein folding and unfolding under force Folding and unfolding single RNA molecules under tension.DFT-inspired methods for quantum thermodynamics.Stochastic analysis of time series for the spatial positions of particles trapped in optical tweezers.Strength of hydrogen bond network takes crucial roles in the dissociation process of inhibitors from the HIV-1 protease binding pocket.A single synthetic small molecule that generates force against a load.Free-energy inference from partial work measurements in small systems.Tertiary DNA structure in the single-stranded hTERT promoter fragment unfolds and refolds by parallel pathways via cooperative or sequential events.Calibration of optical tweezers for in vivo force measurements: how do different approaches compare?RNA reactions one molecule at a time Free energy profiles from single-molecule pulling experiments.Mechanisms of cellular proteostasis: insights from single-molecule approaches Practical axial optical trapping Hysteresis in DNA compaction by Dps is described by an Ising model The importance of surfaces in single-molecule bioscience.Do-it-yourself guide: how to use the modern single-molecule toolkit Local non-equilibrium thermodynamics Symmetries in fluctuations far from equilibrium Biological mechanisms, one molecule at a time Description of quantum coherence in thermodynamic processes requires constraints beyond free energy Possible pathway for ubiquinone shuttling in Rhodospirillum rubrum revealed by molecular dynamics simulation.Mechano-transduction: from molecules to tissues

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Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies

http://www.wikidata.org/entity/Q24675376

description

2005 nî lūn-bûn

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2005 թուականի Սեպտեմբերին հրատարակուած գիտական յօդուած

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2005 թվականի սեպտեմբերին հրատարակված գիտական հոդված

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2005年の論文

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2005年論文

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2005年論文

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2005年論文

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2005年論文

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2005年論文

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2005年论文

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name

Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies

@ast

Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies

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Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies

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type

label

Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies

@ast

Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies

@en

Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies

@nl

prefLabel

Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies

@ast

Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies

@en

Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies

@nl

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Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies

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D Collin

http://www.w3.org/2001/XMLSchema#string

F Ritort

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I Tinoco

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S B Smith

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P2860

Entropy production fluctuation theorem and the nonequilibrium work relation for free energy differences

Nonequilibrium Equality for Free Energy Differences

Mfold web server for nucleic acid folding and hybridization prediction

Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates

Experimental Demonstration of Violations of the Second Law of Thermodynamics for Small Systems and Short Time Scales

Probability of second law violations in shearing steady states

The thermodynamics of DNA structural motifs

Free energy reconstruction from nonequilibrium single-molecule pulling experiments

Thermodynamic and kinetic aspects of RNA pulling experiments.

Role of conserved nucleotides in building the 16 S rRNA binding site for ribosomal protein S15.

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10.1038/NATURE04061

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7056

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437

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Carlos Bustamante

Christopher Jarzynski

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7612938

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cond-mat/0512266

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