A novel method for accurate operon predictions in all sequenced prokaryotes - Test2 - elhamkhani - TriplyDB

A novel method for accurate operon predictions in all sequenced prokaryotes

A novel method for accurate operon predictions in all sequenced prokaryotes

http://www.wikidata.org/entity/Q24791071

about

A taxonomy of bacterial microcompartment loci constructed by a novel scoring method The evolution of two-component systems in bacteria reveals different strategies for niche adaptation The transcriptional landscape of the deep-sea bacterium Photobacterium profundum in both a toxR mutant and its parental strain Profound impact of Hfq on nutrient acquisition, metabolism and motility in the plant pathogen Agrobacterium tumefaciens Comparative proteogenomics: combining mass spectrometry and comparative genomics to analyze multiple genomes Nebulon: a system for the inference of functional relationships of gene products from the rearrangement of predicted operons.Interruptions in gene expression drive highly expressed operons to the leading strand of DNA replication Evolution of a microbial nitrilase gene family: a comparative and environmental genomics study.Prediction of transcriptional terminators in Bacillus subtilis and related species.Phydbac "Gene Function Predictor": a gene annotation tool based on genomic context analysis.OpWise: operons aid the identification of differentially expressed genes in bacterial microarray experiments ODB: a database of operons accumulating known operons across multiple genomes.The power of operon rearrangements for predicting functional associations Solution NMR Structure of Yeast Succinate Dehydrogenase Flavinylation Factor Sdh5 Reveals a Putative Sdh1 Binding Site The transcriptional landscape of Chlamydia pneumoniae Prokaryotic caspase homologs: phylogenetic patterns and functional characteristics reveal considerable diversity Towards a rigorous network of protein-protein interactions of the model sulfate reducer Desulfovibrio vulgaris Hildenborough Characterization of the major formamidopyrimidine-DNA glycosylase homolog in Mycobacterium tuberculosis and its linkage to variable tandem repeats How do haloarchaea synthesize aromatic amino acids?Genome-wide gene expression and RNA half-life measurements allow predictions of regulation and metabolic behavior in Methanosarcina acetivorans The UCSC Archaeal Genome Browser: 2012 update The Zur regulon of Corynebacterium glutamicum ATCC 13032.Quantitative assessment of protein function prediction from metagenomics shotgun sequences Cautions about the reliability of pairwise gene correlations based on expression data.Reconstruction of the Regulatory Network for Bacillus subtilis and Reconciliation with Gene Expression Data Directional RNA-seq reveals highly complex condition-dependent transcriptomes in E. coli K12 through accurate full-length transcripts assembling.Natural variation in SAR11 marine bacterioplankton genomes inferred from metagenomic data Use of genomic DNA control features and predicted operon structure in microarray data analysis: ArrayLeaRNA - a Bayesian approach A structural comparison of lipopolysaccharide biosynthesis loci of Legionella pneumophila serogroup 1 strains.IMPROVED PERFORMANCE OF GENE SET ANALYSIS ON GENOME-WIDE TRANSCRIPTOMICS DATA WHEN USING GENE ACTIVITY STATE ESTIMATES.The PhoP-dependent ncRNA Mcr7 modulates the TAT secretion system in Mycobacterium tuberculosis.The life-cycle of operons MycoperonDB: a database of computationally identified operons and transcriptional units in Mycobacteria.Characterization of relationships between transcriptional units and operon structures in Bacillus subtilis and Escherichia coli Archease from Pyrococcus abyssi improves substrate specificity and solubility of a tRNA m5C methyltransferase.Orthologous transcription factors in bacteria have different functions and regulate different genes.Comparative transcriptomics in Yersinia pestis: a global view of environmental modulation of gene expression.The DeoR-type transcriptional regulator SugR acts as a repressor for genes encoding the phosphoenolpyruvate:sugar phosphotransferase system (PTS) in Corynebacterium glutamicum.Identification of Campylobacter jejuni genes contributing to acid adaptation by transcriptional profiling and genome-wide mutagenesis.Insertion Sequences show diverse recent activities in Cyanobacteria and Archaea.

P2860

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P2860

A novel method for accurate operon predictions in all sequenced prokaryotes

http://www.wikidata.org/entity/Q24791071

description

2005 nî lūn-bûn

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2005 թուականին հրատարակուած գիտական յօդուած

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2005 թվականին հրատարակված գիտական հոդված

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2005年の論文

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2005年論文

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2005年论文

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name

A novel method for accurate operon predictions in all sequenced prokaryotes

@ast

A novel method for accurate operon predictions in all sequenced prokaryotes

@en

A novel method for accurate operon predictions in all sequenced prokaryotes

@nl

type

label

A novel method for accurate operon predictions in all sequenced prokaryotes

@ast

A novel method for accurate operon predictions in all sequenced prokaryotes

@en

A novel method for accurate operon predictions in all sequenced prokaryotes

@nl

prefLabel

A novel method for accurate operon predictions in all sequenced prokaryotes

@ast

A novel method for accurate operon predictions in all sequenced prokaryotes

@en

A novel method for accurate operon predictions in all sequenced prokaryotes

@nl

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Nucleic Acids Research

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A novel method for accurate operon predictions in all sequenced prokaryotes

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Eric J Alm

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Katherine H Huang

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Morgan N Price

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P2860

Operons in Escherichia coli: genomic analyses and predictions

The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequences

The EcoCyc Database

The COG database: new developments in phylogenetic classification of proteins from complete genomes

The use of gene clusters to infer functional coupling

Inference of protein function and protein linkages in Mycobacterium tuberculosis based on prokaryotic genome organization: a combined computational approach

Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles

CRITICA: coding region identification tool invoking comparative analysis

Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements

Comparing the areas under two or more correlated receiver operating characteristic curves: a nonparametric approach

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880-92

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446657

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10.1093/NAR/GKI232

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15701760

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549399

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