The Biomolecular Interaction Network Database and related tools 2005 update - Test2 - elhamkhani - TriplyDB

The Biomolecular Interaction Network Database and related tools 2005 update

The Biomolecular Interaction Network Database and related tools 2005 update

http://www.wikidata.org/entity/Q24794410

about

iRefIndex: a consolidated protein interaction database with provenance Ulysses - an application for the projection of molecular interactions across species.In vitro nuclear interactome of the HIV-1 Tat protein An evaluation of human protein-protein interaction data in the public domain In silico gene prioritization by integrating multiple data sources BioGRID: a general repository for interaction datasets STRING 8--a global view on proteins and their functional interactions in 630 organisms VirHostNet: a knowledge base for the management and the analysis of proteome-wide virus-host interaction networks Biomedical language processing: what's beyond PubMed?STRING 7--recent developments in the integration and prediction of protein interactions MINT: the Molecular INTeraction database APID: Agile Protein Interaction DataAnalyzer Ontological visualization of protein-protein interactions SMART 5: domains in the context of genomes and networks Protein kinases associated with the yeast phosphoproteome.Djinn Lite: a tool for customised gene transcript modelling, annotation-data enrichment and exploration PINT: Protein-protein Interactions Thermodynamic Database.pSTIING: a 'systems' approach towards integrating signalling pathways, interaction and transcriptional regulatory networks in inflammation and cancer.Gene3D: modelling protein structure, function and evolution.MODBASE: a database of annotated comparative protein structure models and associated resources.LOCATE: a mouse protein subcellular localization database.Genes Caught In Flagranti: Integrating Renal Transcriptional Profiles With Genotypes and Phenotypes GWIDD: a comprehensive resource for genome-wide structural modeling of protein-protein interactions Discovery of biological networks from diverse functional genomic data.Structure of a signal transduction regulator, RACK1, fromArabidopsis thaliana Reconstruction and Application of Protein-Protein Interaction Network A review on computational systems biology of pathogen-host interactions The tYNA platform for comparative interactomics: a web tool for managing, comparing and mining multiple networks Building and analyzing protein interactome networks by cross-species comparisons Prioritizing genomic drug targets in pathogens: application to Mycobacterium tuberculosis Protein-protein interactions more conserved within species than across species Structure-templated predictions of novel protein interactions from sequence information Genes and (common) pathways underlying drug addiction Integrated bio-entity network: a system for biological knowledge discovery Detecting mutually exclusive interactions in protein-protein interaction maps iRefR: an R package to manipulate the iRefIndex consolidated protein interaction database Protein interaction sentence detection using multiple semantic kernels Integrative analysis for finding genes and networks involved in diabetes and other complex diseases Penicimenolides A-F, Resorcylic Acid Lactones from Penicillium sp., isolated from the Rhizosphere Soil of Panax notoginseng The MoVIN server for the analysis of protein interaction networks

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The Biomolecular Interaction Network Database and related tools 2005 update

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2005年の論文

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Nucleic Acids Research

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The Biomolecular Interaction Network Database and related tools 2005 update

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P2860

The COG database: an updated version includes eukaryotes

An automated method for finding molecular complexes in large protein interaction networks

Cytoscape: a software environment for integrated models of biomolecular interaction networks

IntAct: an open source molecular interaction database

The Bioperl toolkit: Perl modules for the life sciences

PreBIND and Textomy--mining the biomedical literature for protein-protein interactions using a support vector machine

SeqHound: biological sequence and structure database as a platform for bioinformatics research

The Gene Ontology (GO) database and informatics resource

The Database of Interacting Proteins: 2004 update

Taverna: a tool for the composition and enactment of bioinformatics workflows

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934839

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10.1093/NAR/GKI051

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Database issue

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33

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Michel Dumontier

Belinda S. Parker

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