Complete reannotation of the Arabidopsis genome: methods, tools, protocols and the final release. - Test2 - elhamkhani - TriplyDB

Complete reannotation of the Arabidopsis genome: methods, tools, protocols and the final release.

Complete reannotation of the Arabidopsis genome: methods, tools, protocols and the final release.

http://www.wikidata.org/entity/Q24804698

about

Comparative genomic analysis of fungal genomes reveals intron-rich ancestors Locational distribution of gene functional classes in Arabidopsis thaliana Genoviz Software Development Kit: Java tool kit for building genomics visualization applications The Selaginella genome identifies genetic changes associated with the evolution of vascular plants Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features TreeFam: 2008 Update Combined evidence annotation of transposable elements in genome sequences.Plant MPSS databases: signature-based transcriptional resources for analyses of mRNA and small RNA TreeFam: a curated database of phylogenetic trees of animal gene families Gramene: a bird's eye view of cereal genomes The TIGR Maize Database Genomic mechanisms accounting for the adaptation to parasitism in nematode-trapping fungi Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments Natural and artificial mutants as valuable resources for functional genomics and molecular breeding.Comparative genomic analysis and phylogenetic position of Theileria equi Approaches to Fungal Genome Annotation The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools The functional divergence of short-chain dehydrogenases involved in tropinone reduction.Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis High precision multi-genome scale reannotation of enzyme function by EFICAz.Experimental validation of novel genes predicted in the un-annotated regions of the Arabidopsis genome.PlnTFDB: an integrative plant transcription factor database.CATMA, a comprehensive genome-scale resource for silencing and transcript profiling of Arabidopsis genes.EuCAP, a Eukaryotic Community Annotation Package, and its application to the rice genome.Characterization of paralogous protein families in rice.Analysis of the Pseudoalteromonas tunicata genome reveals properties of a surface-associated life style in the marine environment.Sequenced BAC anchored reference genetic map that reconciles the ten individual chromosomes of Brassica rapa Representing ontogeny through ontology: a developmental biologist's guide to the gene ontology Integrative identification of Arabidopsis mitochondrial proteome and its function exploitation through protein interaction network.Synergistic use of plant-prokaryote comparative genomics for functional annotations The Arabidopsis Information Resource (TAIR): gene structure and function annotation.RNA-Seq improves annotation of protein-coding genes in the cucumber genome.A gradient of auxin and auxin-dependent transcription precedes tropic growth responses.Genome-wide metabolic (re-) annotation of Kluyveromyces lactis.Introns regulate gene expression in Cryptococcus neoformans in a Pab2p dependent pathway.GeMprospector--online design of cross-species genetic marker candidates in legumes and grasses.Detecting small plant peptides using SPADA (Small Peptide Alignment Discovery Application)Improved annotation of 3' untranslated regions and complex loci by combination of strand-specific direct RNA sequencing, RNA-Seq and ESTs.Genome-wide metabolic re-annotation of Ashbya gossypii: new insights into its metabolism through a comparative analysis with Saccharomyces cerevisiae and Kluyveromyces lactis Evolutionary patterns of recently emerged animal duplogs.

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P2860

Complete reannotation of the Arabidopsis genome: methods, tools, protocols and the final release.

http://www.wikidata.org/entity/Q24804698

description

2005 nî lūn-bûn

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Annotation of the Drosophila melanogaster euchromatic genome: a systematic review

An imprinted, mammalian bicistronic transcript encodes two independent proteins

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

Gene ontology: tool for the unification of biology

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

The hidden duplication past of Arabidopsis thaliana.

Genomic sequence, splicing, and gene annotation

GeneMark.hmm: new solutions for gene finding

Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO)

The Pfam protein families database

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