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Metabolic PathFinding: inferring relevant pathways in biochemical networks

Metabolic PathFinding: inferring relevant pathways in biochemical networks

http://www.wikidata.org/entity/Q24812861

about

Genomic analysis of the hydrocarbon-producing, cellulolytic, endophytic fungus Ascocoryne sarcoides Algorithms for effective querying of compound graph-based pathway databases.Inferring branching pathways in genome-scale metabolic networks Enumerating metabolic pathways for the production of heterologous target chemicals in chassis organisms MetaMapp: mapping and visualizing metabolomic data by integrating information from biochemical pathways and chemical and mass spectral similarity.CMPF: class-switching minimized pathfinding in metabolic networks.Can sugars be produced from fatty acids? A test case for pathway analysis tools.Biconnectivity of the cellular metabolism: A cross-species study and its implication for human diseases.A critical examination of stoichiometric and path-finding approaches to metabolic pathways.Validation of a network-based strategy for the optimization of combinatorial target selection in breast cancer therapy: siRNA knockdown of network targets in MDA-MB-231 cells as an in vitro model for inhibition of tumor development.Putative bacterial interactions from metagenomic knowledge with an integrative systems ecology approach Computational methods to identify metabolic sub-networks based on metabolomic profiles.Identification of metabolic pathways using pathfinding approaches: a systematic review.Hi-Jack: a novel computational framework for pathway-based inference of host-pathogen interactions.NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways Pathway discovery in metabolic networks by subgraph extraction.MetaRoute: fast search for relevant metabolic routes for interactive network navigation and visualization.Weighting schemes in metabolic graphs for identifying biochemical routes.In response to 'Can sugars be produced from fatty acids? A test case for pathway analysis tools'.An extended bioreaction database that significantly improves reconstruction and analysis of genome-scale metabolic networks.Observing local and global properties of metabolic pathways: 'load points' and 'choke points' in the metabolic networks.Optimal metabolic route search based on atom mappings.A review of computational tools for design and reconstruction of metabolic pathways.Enumerating all possible biosynthetic pathways in metabolic networks.Can sugars be produced from fatty acids? A test case for pathway analysis tools

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P2860

Metabolic PathFinding: inferring relevant pathways in biochemical networks

http://www.wikidata.org/entity/Q24812861

description

2005 nî lūn-bûn

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2005 թուականի Յուլիսին հրատարակուած գիտական յօդուած

@hyw

2005 թվականի հուլիսին հրատարակված գիտական հոդված

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2005年の論文

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2005年論文

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2005年論文

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2005年論文

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2005年論文

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2005年論文

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2005年论文

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name

Metabolic PathFinding: inferring relevant pathways in biochemical networks

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Metabolic PathFinding: inferring relevant pathways in biochemical networks

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Metabolic PathFinding: inferring relevant pathways in biochemical networks

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Metabolic PathFinding: inferring relevant pathways in biochemical networks

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Metabolic PathFinding: inferring relevant pathways in biochemical networks

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Metabolic PathFinding: inferring relevant pathways in biochemical networks

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Metabolic PathFinding: inferring relevant pathways in biochemical networks

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Metabolic PathFinding: inferring relevant pathways in biochemical networks

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Metabolic PathFinding: inferring relevant pathways in biochemical networks

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Nucleic Acids Research

P1476

Metabolic PathFinding: inferring relevant pathways in biochemical networks

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Didier Croes

http://www.w3.org/2001/XMLSchema#string

Fabian Couche

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P2860

KEGG: Kyoto Encyclopedia of Genes and Genomes

NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

The KEGG databases at GenomeNet.

Analysis of gene expression data with pathway scores.

Detection of elementary flux modes in biochemical networks: a promising tool for pathway analysis and metabolic engineering.

Graph-based analysis of metabolic networks.

The metabolic world of Escherichia coli is not small

The aMAZE LightBench: a web interface to a relational database of cellular processes.

Homology, pathway distance and chromosomal localization of the small molecule metabolism enzymes in Escherichia coli.

Analysis of metabolic networks using a pathway distance metric through linear programming.

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W326-30

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10.1093/NAR/GKI437

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Web Server issue

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33

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Jacques van Helden

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2005-07-01T00:00:00Z

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7764290

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15980483

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1160198

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