Causes of evolutionary rate variation among protein sites
about
Functional Sites Induce Long-Range Evolutionary Constraints in EnzymesPhylogenetic analyses reveal molecular signatures associated with functional divergence among Subtilisin like Serine Proteases are linked to lifestyle transitions in HypocrealesDissecting the roles of local packing density and longer-range effects in protein sequence evolutionDetection and sequence/structure mapping of biophysical constraints to protein variation in saturated mutational libraries and protein sequence alignments with a dedicated serverChemosensory adaptations of the mountain fly Drosophila nigrosparsa (Insecta: Diptera) through genomics' and structural biology's lenses.Improving prediction of helix-helix packing in membrane proteins using predicted contact numbers as restraints.Biophysical Models of Protein Evolution: Understanding the Patterns of Evolutionary Sequence Divergence.The Impact of Native State Switching on Protein Sequence Evolution.Computational prediction of the tolerance to amino-acid deletion in green-fluorescent protein.On the Relationship between Residue Structural Environment and Sequence Conservation in Proteins.Modular Organization of Residue-Level Contacts Shapes the Selection Pressure on Individual Amino Acid Sites of Ribosomal Proteins.Disease-associated mitochondrial mutations and the evolution of primate mitogenomes.SubVis: an interactive R package for exploring the effects of multiple substitution matrices on pairwise sequence alignmentNon-Markovian effects on protein sequence evolution due to site dependent substitution ratesSusceptibility to type 2 diabetes may be modulated by haplotypes in G6PC2, a target of positive selection.Why do phylogenomic data sets yield conflicting trees? Data type influences the avian tree of life more than taxon sampling.Evolution of nonspectral rhodopsin function at high altitudes.Sequence amplification via cell passaging creates spurious signals of positive adaptation in influenza virus H3N2 hemagglutininConnecting the Sequence-Space of Bacterial Signaling Proteins to Phenotypes Using Coevolutionary Landscapes.Identification of positive selection in genes is greatly improved by using experimentally informed site-specific models.Calculating site-specific evolutionary rates at the amino-acid or codon level yields similar rate estimates.Extensively Parameterized Mutation-Selection Models Reliably Capture Site-Specific Selective Constraint.Contrasting Rates of Molecular Evolution and Patterns of Selection among Gymnosperms and Flowering Plants.Detecting Adaptation in Protein-Coding Genes Using a Bayesian Site-Heterogeneous Mutation-Selection Codon Substitution Model.A Comparison of One-Rate and Two-Rate Inference Frameworks for Site-Specific dN/dS Estimation.ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules.Evolutionary analysis of Old World arenaviruses reveals a major adaptive contribution of the viral polymerase.Evolutionary interplay between structure, energy and epistasis in the coat protein of the ϕX174 phage family.Intermediate divergence levels maximize the strength of structure-sequence correlations in enzymes and viral proteins.Improved insights into protein thermal stability: from the molecular to the structurome scale.Net Evolutionary Loss of Residue Polarity in Drosophilid Protein Cores Indicates Ongoing Optimization of Amino Acid Composition.Measuring evolutionary rates of proteins in a structural context.Substitution rates predicted by stability-constrained models of protein evolution are not consistent with empirical data.Experimental determination and prediction of the fitness effects of random point mutations in the biosynthetic enzyme HisA.Comparison of Five Protein Engineering Strategies for Stabilizing an α/β-Hydrolase.Combining protein sequence, structure, and dynamics: A novel approach for functional evolution analysis of PAS domain superfamily.Accelerated simulation of evolutionary trajectories in origin-fixation models.Computational prediction of the phenotypic effects of genetic variants: basic concepts and some application examples in Drosophila nervous system genes.Docking, thermodynamics and molecular dynamics (MD) studies of a non-canonical protease inhibitor, MP-4, from Mucuna pruriens.Relative evolutionary rate inference in HyPhy with LEISR.
P2860
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P2860
Causes of evolutionary rate variation among protein sites
description
2016 nî lūn-bûn
@nan
2016 թուականի Փետրուարին հրատարակուած գիտական յօդուած
@hyw
2016 թվականի փետրվարին հրատարակված գիտական հոդված
@hy
2016年の論文
@ja
2016年論文
@yue
2016年論文
@zh-hant
2016年論文
@zh-hk
2016年論文
@zh-mo
2016年論文
@zh-tw
2016年论文
@wuu
name
Causes of evolutionary rate variation among protein sites
@ast
Causes of evolutionary rate variation among protein sites
@en
Causes of evolutionary rate variation among protein sites
@nl
type
label
Causes of evolutionary rate variation among protein sites
@ast
Causes of evolutionary rate variation among protein sites
@en
Causes of evolutionary rate variation among protein sites
@nl
prefLabel
Causes of evolutionary rate variation among protein sites
@ast
Causes of evolutionary rate variation among protein sites
@en
Causes of evolutionary rate variation among protein sites
@nl
P2860
P50
P3181
P356
P1476
Causes of evolutionary rate variation among protein sites
@en
P2860
P2888
P304
P3181
P356
10.1038/NRG.2015.18
P407
P577
2016-02-01T00:00:00Z
P6179
1002586429