Noise contributions in an inducible genetic switch: a whole-cell simulation study - Test2 - elhamkhani - TriplyDB

Noise contributions in an inducible genetic switch: a whole-cell simulation study

Noise contributions in an inducible genetic switch: a whole-cell simulation study

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Comparing protein folding in vitro and in vivo: foldability meets the fitness challenge A Complete Pathway Model for Lipid A Biosynthesis in Escherichia coli Towards a computational model of a methane producing archaeum Automated single cell microbioreactor for monitoring intracellular dynamics and cell growth in free solution Lattice Microbes: high-performance stochastic simulation method for the reaction-diffusion master equation.Simulation of reaction diffusion processes over biologically relevant size and time scales using multi-GPU workstations.Time delay induced transition of gene switch and stochastic resonance in a genetic transcriptional regulatory model.Diagnostics for stochastic genome-scale modeling via model slicing and debugging ReaDDy--a software for particle-based reaction-diffusion dynamics in crowded cellular environments Protein stability and folding kinetics in the nucleus and endoplasmic reticulum of eucaryotic cells Space-induced bifurcation in repression-based transcriptional circuits.Iterative experiment design guides the characterization of a light-inducible gene expression circuit Sources of Variability in a Synthetic Gene Oscillator.A biophysical model of supercoiling dependent transcription predicts a structural aspect to gene regulation.Toward a Whole-Cell Model of Ribosome Biogenesis: Kinetic Modeling of SSU Assembly.Effects of DNA replication on mRNA noise.Whole Cell Modeling: From Single Cells to Colonies.Heterogeneity in protein expression induces metabolic variability in a modeled Escherichia coli population.Predictive biophysical modeling and understanding of the dynamics of mRNA translation and its evolution.Reaching new levels of realism in modeling biological macromolecules in cellular environments.Foundations for modeling the dynamics of gene regulatory networks: a multilevel-perspective review.The future of whole-cell modeling.What makes the lac-pathway switch: identifying the fluctuations that trigger phenotype switching in gene regulatory systems.Bursting noise in gene expression dynamics: linking microscopic and mesoscopic models.Challenges of Integrating Stochastic Dynamics and Cryo-Electron Tomograms in Whole-Cell Simulations.Dynamics of simple gene-network motifs subject to extrinsic fluctuations.Parameter discovery in stochastic biological models using simulated annealing and statistical model checking.Ribosome biogenesis in replicating cells: Integration of experiment and theory An integrative, multi-scale, genome-wide model reveals the phenotypic landscape of Escherichia coli.The dawn of virtual cell biology.Digital biology: a new era has begun.Why Build Whole-Cell Models?Effects of cell cycle noise on excitable gene circuits.Emerging whole-cell modeling principles and methods.A Digitally Programmable Cytomorphic Chip for Simulation of Arbitrary Biochemical Reaction Networks.Determining the stability of genetic switches: explicitly accounting for mRNA noise.Extrinsic Noise Driven Phenotype Switching in a Self-Regulating Gene

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Noise contributions in an inducible genetic switch: a whole-cell simulation study

http://www.wikidata.org/entity/Q27333733

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2011 nî lūn-bûn

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2011 թուականի Մարտին հրատարակուած գիտական յօդուած

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2011 թվականի մարտին հրատարակված գիտական հոդված

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2011年の論文

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2011年学术文章

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2011年学术文章

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2011年学术文章

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2011年学术文章

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2011年学术文章

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2011年學術文章

@yue

name

Noise contributions in an inducible genetic switch: a whole-cell simulation study

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Noise contributions in an inducible genetic switch: a whole-cell simulation study

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Noise contributions in an inducible genetic switch: a whole-cell simulation study

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type

label

Noise contributions in an inducible genetic switch: a whole-cell simulation study

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Noise contributions in an inducible genetic switch: a whole-cell simulation study

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Noise contributions in an inducible genetic switch: a whole-cell simulation study

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prefLabel

Noise contributions in an inducible genetic switch: a whole-cell simulation study

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Noise contributions in an inducible genetic switch: a whole-cell simulation study

@en

Noise contributions in an inducible genetic switch: a whole-cell simulation study

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JOURNAL.PCBI.1002010

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PLOS Computational Biology

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Noise contributions in an inducible genetic switch: a whole-cell simulation study

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Elijah Roberts

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Julio O Ortiz

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Wolfgang Baumeister

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P2860

Stochastic mRNA synthesis in mammalian cells

Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells

Nature, nurture, or chance: stochastic gene expression and its consequences

Intrinsic noise in gene regulatory networks

Three-dimensional super-resolution imaging by stochastic optical reconstruction microscopy

Stochastic focusing: fluctuation-enhanced sensitivity of intracellular regulation

Induction of the lac promoter in the absence of DNA loops and the stoichiometry of induction

Diffusion, crowding & protein stability in a dynamic molecular model of the bacterial cytoplasm

A closer view of the conformation of the Lac repressor bound to operator

Imaging intracellular fluorescent proteins at nanometer resolution

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e1002010

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3693317

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10.1371/JOURNAL.PCBI.1002010

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