Specific and Modular Binding Code for Cytosine Recognition in Pumilio/FBF (PUF) RNA-binding Domains - Test2 - elhamkhani - TriplyDB

Specific and Modular Binding Code for Cytosine Recognition in Pumilio/FBF (PUF) RNA-binding Domains

Specific and Modular Binding Code for Cytosine Recognition in Pumilio/FBF (PUF) RNA-binding Domains

http://www.wikidata.org/entity/Q27666276

about

Engineering RNA-binding proteins with diverse activities High-throughput characterization of protein-RNA interactions Patterns and plasticity in RNA-protein interactions enable recruitment of multiple proteins through a single site An artificial PPR scaffold for programmable RNA recognition Evolutionary Conservation and Diversification of Puf RNA Binding Proteins and Their mRNA Targets Nop9 binds the central pseudoknot region of 18S rRNA A protein-RNA specificity code enables targeted activation of an endogenous human transcript A combinatorial amino acid code for RNA recognition by pentatricopeptide repeat proteins.Diversity in genetic in vivo methods for protein-protein interaction studies: from the yeast two-hybrid system to the mammalian split-luciferase system.Nucleic acid recognition by tandem helical repeats.A divergent Pumilio repeat protein family for pre-rRNA processing and mRNA localization.Modular assembly of designer PUF proteins for specific post-transcriptional regulation of endogenous RNA Probing RNA-protein networks: biochemistry meets genomics Targeted translational regulation using the PUF protein family scaffold.Divergence of Pumilio/fem-3 mRNA binding factor (PUF) protein specificity through variations in an RNA-binding pocket In vivo analysis of trypanosome mitochondrial RNA function by artificial site-specific RNA endonuclease-mediated knockdown.Human Pumilio proteins recruit multiple deadenylases to efficiently repress messenger RNAs A Nucleolar PUF RNA-binding Protein with Specificity for a Unique RNA Sequence.De-coding and re-coding RNA recognition by PUF and PPR repeat proteins.Biochemical characterization of the Caenorhabditis elegans FBF.CPB-1 translational regulation complex identifies conserved protein interaction hotspots.Engineered proteins with Pumilio/fem-3 mRNA binding factor scaffold to manipulate RNA metabolism.How a CCA sequence protects mature tRNAs and tRNA precursors from action of the processing enzyme RNase BN/RNase Z Pentatricopeptide repeats: modular blocks for building RNA-binding proteins.Treatment of type 1 myotonic dystrophy by engineering site-specific RNA endonucleases that target (CUG)(n) repeats.Modular recognition of nucleic acids by PUF, TALE and PPR proteins.Engineering RNA-binding proteins for biology Protein universe containing a PUA RNA-binding domain.Engineering reprogrammable RNA-binding proteins for study and manipulation of the transcriptome.A pumilio homolog in Polycelis sp.Engineering RNA endonucleases with customized sequence specificities.Inducible Control of mRNA Transport Using Reprogrammable RNA-Binding Proteins.The dataset for protein-RNA binding affinity.Engineering specificity changes on a RanBP2 zinc finger that binds single-stranded RNA.Evolutionarily dynamic roles of a PUF RNA-binding protein in the somatic development of Caenorhabditis briggsae.Structural basis for the specific recognition of 18S rRNA by APUM23.An Arabidopsis divergent pumilio protein, APUM24, is essential for embryogenesis and required for faithful pre-rRNA processing.A Genetically Encodable System for Sequence-Specific Detection of RNAs in Two Colors.Tetramolecular fluorescence complementation for detection of specific RNAs in vitro.Engineering Artificial Factors to Specifically Manipulate Alternative Splicing in Human Cells.Bidirectional regulation of mRNA translation in mammalian cells by using PUF domains.

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P2860

Specific and Modular Binding Code for Cytosine Recognition in Pumilio/FBF (PUF) RNA-binding Domains

http://www.wikidata.org/entity/Q27666276

description

2011 nî lūn-bûn

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2011 թուականի Յուլիսին հրատարակուած գիտական յօդուած

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2011 թվականի հուլիսին հրատարակված գիտական հոդված

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2011年の論文

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2011年論文

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2011年論文

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2011年論文

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2011年論文

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2011年論文

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2011年论文

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name

Specific and Modular Binding C ...... /FBF (PUF) RNA-binding Domains

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Specific and Modular Binding C ...... /FBF (PUF) RNA-binding Domains

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Specific and Modular Binding C ...... /FBF (PUF) RNA-binding Domains

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Specific and Modular Binding C ...... /FBF (PUF) RNA-binding Domains

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Specific and Modular Binding C ...... /FBF (PUF) RNA-binding Domains

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Specific and Modular Binding C ...... /FBF (PUF) RNA-binding Domains

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JBC.M111.244889

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Journal of Biological Chemistry

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Specific and modular binding c ...... /FBF (PUF) RNA-binding domains

@en

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Caleb Cassidy-Amstutz

http://www.w3.org/2001/XMLSchema#string

Chunhua Li

http://www.w3.org/2001/XMLSchema#string

Gang Lu

http://www.w3.org/2001/XMLSchema#string

Mark R Jezyk

http://www.w3.org/2001/XMLSchema#string

Rebecca Bigler

http://www.w3.org/2001/XMLSchema#string

Yang Wang

http://www.w3.org/2001/XMLSchema#string

Zefeng Wang

http://www.w3.org/2001/XMLSchema#string

P2860

Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast

A universal code for RNA recognition by PUF proteins

SMART, a simple modular architecture research tool: identification of signaling domains

PHENIX: a comprehensive Python-based system for macromolecular structure solution

SMART 6: recent updates and new developments

Processing of X-ray diffraction data collected in oscillation mode

Crystal structure of a Pumilio homology domain

Modular recognition of RNA by a human pumilio-homology domain

A 5' cytosine binding pocket in Puf3p specifies regulation of mitochondrial mRNAs

Stacking interactions in PUF-RNA complexes

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10.1074/JBC.M111.244889

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30

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286

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2011-06-08T00:00:00Z

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