Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae
about
Discovering novel cis-regulatory motifs using functional networksPhyloGibbs: a Gibbs sampling motif finder that incorporates phylogenyEvolution of the holozoan ribosome biogenesis regulonMAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomesMetabolic flux balance analysis and the in silico analysis of Escherichia coli K-12 gene deletionsModulation of the vitamin D3 response by cancer-associated mutant p53Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteinsUnbiased screening for transcriptional targets of ZKSCAN3 identifies integrin beta 4 and vascular endothelial growth factor as downstream targetsDiscovery of the principal specific transcription factors of Apicomplexa and their implication for the evolution of the AP2-integrase DNA binding domainsMONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary modelComputational prediction of transcription-factor binding site locationsInclusion of neighboring base interdependencies substantially improves genome-wide prokaryotic transcription factor binding site predictionNucleosome-coupled expression differences in closely-related speciesJASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 updateGlobal gene expression of Prochlorococcus ecotypes in response to changes in nitrogen availabilityA survey of DNA motif finding algorithmsExploring the conditional coregulation of yeast gene expression through fuzzy k-means clustering.Scoring functions for transcription factor binding site predictionGenome-wide mapping of the cohesin complex in the yeast Saccharomyces cerevisiaeFast and systematic genome-wide discovery of conserved regulatory elements using a non-alignment based approachPhylogenetically and spatially conserved word pairs associated with gene-expression changes in yeastsThe cohesin complex: sequence homologies, interaction networks and shared motifsRas and Gpa2 mediate one branch of a redundant glucose signaling pathway in yeastFrom sequence to structure and back again: approaches for predicting protein-DNA bindingAb initio identification of putative human transcription factor binding sites by comparative genomicsExtraction of transcription regulatory signals from genome-wide DNA-protein interaction dataCorrelating overrepresented upstream motifs to gene expression: a computational approach to regulatory element discovery in eukaryotesComputational identification of transcription factor binding sites by functional analysis of sets of genes sharing overrepresented upstream motifsEvaluation of thresholds for the detection of binding sites for regulatory proteins in Escherichia coli K12 DNAMicroarray analysis of orthologous genes: conservation of the translational machinery across species at the sequence and expression levelConservation and evolution of cis-regulatory systems in ascomycete fungiUsing hexamers to predict cis-regulatory motifs in Drosophila.The cell cycle-regulated genes of Schizosaccharomyces pombe.FOOTER: a web tool for finding mammalian DNA regulatory regions using phylogenetic footprinting.A catalog of stability-associated sequence elements in 3' UTRs of yeast mRNAsExplicit equilibrium modeling of transcription-factor binding and gene regulation.POCO: discovery of regulatory patterns from promoters of oppositely expressed gene setsT-profiler: scoring the activity of predefined groups of genes using gene expression dataWordSpy: identifying transcription factor binding motifs by building a dictionary and learning a grammarMeasuring similarities between transcription factor binding sites
P2860
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P2860
Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae
description
2000 nî lūn-bûn
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2000 թուականի Մարտին հրատարակուած գիտական յօդուած
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2000 թվականի մարտին հրատարակված գիտական հոդված
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2000年の論文
@ja
2000年論文
@yue
2000年論文
@zh-hant
2000年論文
@zh-hk
2000年論文
@zh-mo
2000年論文
@zh-tw
2000年论文
@wuu
name
Computational identification o ...... es in Saccharomyces cerevisiae
@ast
Computational identification o ...... es in Saccharomyces cerevisiae
@en
Computational identification o ...... es in Saccharomyces cerevisiae
@nl
type
label
Computational identification o ...... es in Saccharomyces cerevisiae
@ast
Computational identification o ...... es in Saccharomyces cerevisiae
@en
Computational identification o ...... es in Saccharomyces cerevisiae
@nl
prefLabel
Computational identification o ...... es in Saccharomyces cerevisiae
@ast
Computational identification o ...... es in Saccharomyces cerevisiae
@en
Computational identification o ...... es in Saccharomyces cerevisiae
@nl
P2093
P3181
P356
P1476
Computational identification o ...... es in Saccharomyces cerevisiae
@en
P2093
G M Church
J D Hughes
S Tavazoie
P304
P3181
P356
10.1006/JMBI.2000.3519
P407
P577
2000-03-10T00:00:00Z