Automated protein structure modeling in CASP9 by I-TASSER pipeline combined with QUARK-based ab initio folding and FG-MD-based structure refinement - Test2 - elhamkhani - TriplyDB

Automated protein structure modeling in CASP9 by I-TASSER pipeline combined with QUARK-based ab initio folding and FG-MD-based structure refinement

Automated protein structure modeling in CASP9 by I-TASSER pipeline combined with QUARK-based ab initio folding and FG-MD-based structure refinement

http://www.wikidata.org/entity/Q28252646

about

Computational enzyme design approaches with significant biological outcomes: progress and challenges Membrane proteins: always an insoluble problem?Innovations in proteomic profiling of cancers: alternative splice variants as a new class of cancer biomarker candidates and bridging of proteomics with structural biology Insights from molecular dynamics simulations: structural basis for the V567D mutation-induced instability of zebrafish alpha-dystroglycan and comparison with the murine model The passenger-associated transport repeat promotes virulence factor secretion efficiency and delineates a distinct autotransporter subtype.Evaluation of predictions in the CASP10 model refinement category.Mass spectrometry coupled experiments and protein structure modeling methods.Atomic-accuracy prediction of protein loop structures through an RNA-inspired Ansatz.Low-resolution structure of the full-length barley (Hordeum vulgare) SGT1 protein in solution, obtained using small-angle X-ray scattering.Improving fragment quality for de novo structure prediction.Evaluation of unrestrained replica-exchange simulations using dynamic walkers in temperature space for protein structure refinement.How good are simplified models for protein structure prediction?The structure and dynamics of BmR1 protein from Brugia malayi: in silico approaches PCP-ML: protein characterization package for machine learning.Computational modeling suggests dimerization of equine infectious anemia virus Rev is required for RNA binding.I-TASSER server: new development for protein structure and function predictions Protein structure refinement via molecular-dynamics simulations: What works and what does not?Template-based protein structure prediction in CASP11 and retrospect of I-TASSER in the last decade.ResQ: An Approach to Unified Estimation of B-Factor and Residue-Specific Error in Protein Structure Prediction.Protein Structure and Function Prediction Using I-TASSER Advances in the Prediction of Turn Structures in Peptides and Proteins.A comparison of different functions for predicted protein model quality assessment.Why Is There a Glass Ceiling for Threading Based Protein Structure Prediction Methods?A position-specific distance-dependent statistical potential for protein structure and functional study What is the best reference state for designing statistical atomic potentials in protein structure prediction?Toward optimal fragment generations for ab initio protein structure assembly.Inferences from structural comparison: flexibility, secondary structure wobble and sequence alignment optimization.PI(2)PE: A Suite of Web Servers for Predictions Ranging From Protein Structure to Binding Kinetics.Multiobjective evolutionary algorithm with many tables for purely ab initio protein structure prediction.GalaxyRefine: Protein structure refinement driven by side-chain repacking Interplay of I-TASSER and QUARK for template-based and ab initio protein structure prediction in CASP10.CYPSI: a structure-based interface for cytochrome P450s and ligands in Arabidopsis thaliana Evidence supporting the existence of a NUPR1-like family of helix-loop-helix chromatin proteins related to, yet distinct from, AT hook-containing HMG proteins LabCaS: labeling calpain substrate cleavage sites from amino acid sequence using conditional random fields.H2S and NO cooperatively regulate vascular tone by activating a neuroendocrine HNO-TRPA1-CGRP signalling pathway.A conformation ensemble approach to protein residue-residue contact.An evolution-based approach to De Novo protein design and case study on Mycobacterium tuberculosis.KECSA-Movable Type Implicit Solvation Model (KMTISM).Functional and Spectroscopic Characterization of Chlamydomonas reinhardtii Truncated Hemoglobins.Design of symmetric TIM barrel proteins from first principles.

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Automated protein structure modeling in CASP9 by I-TASSER pipeline combined with QUARK-based ab initio folding and FG-MD-based structure refinement

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2011 nî lūn-bûn

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2011 թվականին հրատարակված գիտական հոդված

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2011年の論文

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2011年学术文章

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2011年學術文章

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Automated protein structure mo ...... -MD-based structure refinement

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Automated protein structure mo ...... -MD-based structure refinement

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Automated protein structure mo ...... -MD-based structure refinement

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Automated protein structure mo ...... -MD-based structure refinement

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Automated protein structure mo ...... -MD-based structure refinement

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Automated protein structure mo ...... -MD-based structure refinement

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Ambrish Roy

http://www.w3.org/2001/XMLSchema#string

Dong Xu

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Jian Zhang

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Yang Zhang

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P2860

I-TASSER server for protein 3D structure prediction

The protein structure prediction problem could be solved using the current PDB library

Progress and challenges in protein structure prediction

The Protein Data Bank

TM-align: a protein structure alignment algorithm based on the TM-score

I-TASSER: a unified platform for automated protein structure and function prediction

Atomic-level protein structure refinement using fragment-guided molecular dynamics conformation sampling

MUSTER: Improving protein sequence profile-profile alignments by using multiple sources of structure information

MolProbity: all-atom structure validation for macromolecular crystallography

LOMETS: a local meta-threading-server for protein structure prediction

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147-60

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scholarly article

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1134557

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10.1002/PROT.23111

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S10

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79 Suppl 10

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2011-01-01T00:00:00Z

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221717035

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22069036

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protein structure

protein folding

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3228277

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