Single cell genome amplification accelerates identification of the apratoxin biosynthetic pathway from a complex microbial assemblage - Test2 - elhamkhani - TriplyDB

Single cell genome amplification accelerates identification of the apratoxin biosynthetic pathway from a complex microbial assemblage

Single cell genome amplification accelerates identification of the apratoxin biosynthetic pathway from a complex microbial assemblage

http://www.wikidata.org/entity/Q28477732

about

SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing Discovery Strategies of Bioactive Compounds Synthesized by Nonribosomal Peptide Synthetases and Type-I Polyketide Synthases Derived from Marine Microbiomes.Lessons from the past and charting the future of marine natural products drug discovery and chemical biology Biocatalysts and small molecule products from metagenomic studies BayesHammer: Bayesian clustering for error correction in single-cell sequencing Emerging concepts promising new horizons for marine biodiscovery and synthetic biology Mining the metabiome: identifying novel natural products from microbial communities.Insights from the sea: structural biology of marine polyketide synthases The future is now: single-cell genomics of bacteria and archaea Genomic insights into the marine sponge microbiome.An environmental bacterial taxon with a large and distinct metabolic repertoire.Metagenomic small molecule discovery methods.Phylogenetic inferences reveal a large extent of novel biodiversity in chemically rich tropical marine cyanobacteria Meta-omic characterization of prokaryotic gene clusters for natural product biosynthesis.Natural product biosyntheses in cyanobacteria: A treasure trove of unique enzymes.Dung-inhabiting fungi: a potential reservoir of novel secondary metabolites for the control of plant pathogens.Combining Mass Spectrometric Metabolic Profiling with Genomic Analysis: A Powerful Approach for Discovering Natural Products from Cyanobacteria.Cyclization of fungal nonribosomal peptides by a terminal condensation-like domain Apratoxin H and apratoxin A sulfoxide from the Red Sea cyanobacterium Moorea producens.Biosynthetic origin of butyrolactol A, an antifungal polyketide produced by a marine-derived Streptomyces.Bioactive compounds synthesized by non-ribosomal peptide synthetases and type-I polyketide synthases discovered through genome-mining and metagenomics.Genomic sequencing of uncultured microorganisms from single cells.Bringing microbial interactions to light using imaging mass spectrometry.Challenges of metagenomics and single-cell genomics approaches for exploring cyanobacterial diversity.The use of evolutionary approaches to understand single cell genomes.Genome sequence and composition of a tolyporphin-producing cyanobacterium-microbial community.Unique marine derived cyanobacterial biosynthetic genes for chemical diversity.Comparative genomics uncovers the prolific and distinctive metabolic potential of the cyanobacterial genus Moorea.Mining prokaryotes for antimicrobial compounds: from diversity to function.Phylogenetic analysis of cultivation-resistant terrestrial cyanobacteria with massive sheaths (Stigonema spp. and Petalonema alatum, Nostocales, Cyanobacteria) using single-cell and filament sequencing of environmental samples.Application of genomic technologies to measure and monitor antibiotic resistance in animals.Impact of nitrogen sources on gene expression and toxin production in the diazotroph Cylindrospermopsis raciborskii CS-505 and non-diazotroph Raphidiopsis brookii D9.On the origin of 3-methylglutaconic acid in disorders of mitochondrial energy metabolism Genomic mining for novel FADH₂-dependent halogenases in marine sponge-associated microbial consortia.The Phormidolide Biosynthetic Gene Cluster: A trans-AT PKS Pathway Encoding a Toxic Macrocyclic Polyketide.Evaluation of Streptomyces coelicolor A3(2) as a heterologous expression host for the cyanobacterial protein kinase C activator lyngbyatoxin A.Beyond the bulk: disclosing the life of single microbial cells.A Mononuclear Iron-Dependent Methyltransferase Catalyzes Initial Steps in Assembly of the Apratoxin A Polyketide Starter Unit.Combined genetic and bioactivity-based prioritization leads to the isolation of an endophyte-derived antimycobacterial compound.PKS-NRPS Enzymology and Structural Biology: Considerations in Protein Production.

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Single cell genome amplification accelerates identification of the apratoxin biosynthetic pathway from a complex microbial assemblage

http://www.wikidata.org/entity/Q28477732

description

2011 nî lūn-bûn

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2011 թուականի Ապրիլին հրատարակուած գիտական յօդուած

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2011年の論文

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The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific

Whole genome amplification and de novo assembly of single bacterial cells.

A polyketide synthase-peptide synthetase gene cluster from an uncultured bacterial symbiont of Paederus beetles

Genome sequencing in microfabricated high-density picolitre reactors

Genomic sequencing of single microbial cells from environmental samples

SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB

The neighbor-joining method: a new method for reconstructing phylogenetic trees

CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP.

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

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