Decelerated genome evolution in modern vertebrates revealed by analysis of multiple lancelet genomes - Test2 - elhamkhani - TriplyDB

Decelerated genome evolution in modern vertebrates revealed by analysis of multiple lancelet genomes

Decelerated genome evolution in modern vertebrates revealed by analysis of multiple lancelet genomes

http://www.wikidata.org/entity/Q28652639

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Evolution of the RAG1-RAG2 locus: both proteins came from the same transposon Homeodomain proteins: an update Lineage-specific duplication of amphioxus retinoic acid degrading enzymes (CYP26) resulted in sub-functionalization of patterning and homeostatic roles Putative extremely high rate of proteome innovation in lancelets might be explained by high rate of gene prediction errors Conserved Noncoding Elements in the Most Distant Genera of Cephalochordates: The Goldilocks Principle Transcriptome analysis of different developmental stages of amphioxus reveals dynamic changes of distinct classes of genes during development Evolution of the highly networked deubiquitinating enzymes USP4, USP15, and USP11 Kinetics of recruitment and allosteric activation of ARHGEF25 isoforms by the heterotrimeric G-protein Gαq Evolutionary history of the extant amphioxus lineage with shallow-branching diversification.Intron Invasions Trace Algal Speciation and Reveal Nearly Identical Arctic and Antarctic Micromonas Populations.The Nuclear DNA Content and Genetic Diversity of Lampetra morii.The evolution of genes encoding for green fluorescent proteins: insights from cephalochordates (amphioxus)Selection of reliable reference genes for normalization of quantitative RT-PCR from different developmental stages and tissues in amphioxus.The chordate ancestor possessed a single copy of the Brachyury gene for notochord acquisition Genome-wide gene expression analysis of amphioxus (Branchiostoma belcheri) following lipopolysaccharide challenge using strand-specific RNA-seq.HaploMerger2: rebuilding both haploid sub-assemblies from high-heterozygosity diploid genome assembly.H-BLAST: a fast protein sequence alignment toolkit on heterogeneous computers with GPUs.New insights into the evolutionary origins of the recombination-activating gene proteins and V(D)J recombination.RAG Recombinase as a Selective Pressure for Genome Evolution A simple method for selecting spawning-ready individuals out from laboratorial cultured amphioxus population.Discovery of an Active RAG Transposon Illuminates the Origins of V(D)J Recombination.Phylogenetic analysis of the metazoan carotenoid oxygenase superfamily: a new ancestral gene assemblage of BCO-like (BCOL) proteins.Transcriptome-wide analysis of immune-responsive microRNAs against poly (I:C) challenge in Branchiostoma belcheri by deep sequencing and bioinformatics.The conserved ancient role of chordate PIAS as a multilevel repressor of the NF-κB pathway.Genome-wide gene expression analysis in the amphioxus, Branchiostoma belcheri after poly (I: C) challenge using strand-specific RNA-seq.Amphioxus Sp5 is a member of a conserved Specificity Protein complement and is modulated by Wnt/β-catenin signalling.Amphioxus SYCP1: a case of retrogene replacement and co-option of regulatory elements adjacent to the ParaHox cluster.The role of transposable elements in functional evolution of amphioxus genome: the case of opsin gene family.Evolution and Distribution of C7-Cyclitol Synthases in Prokaryotes and Eukaryotes.An evolutionary perspective on the systems of adaptive immunity.Genome-wide comparison of the protein-coding repertoire reveals fast evolution of immune-related genes in cephalochordates and Osteichthyes superclass.Genetic basis of priority effects: insights from nectar yeast.Phagocytic intracellular digestion in amphioxus (Branchiostoma).Pax3/7 duplicated and diverged independently in amphioxus, the basal chordate lineage.Trichoplax genomes reveal profound admixture and suggest stable wild populations without bisexual reproduction Morphological Stasis and Proteome Innovation in Cephalochordates

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Decelerated genome evolution in modern vertebrates revealed by analysis of multiple lancelet genomes

http://www.wikidata.org/entity/Q28652639

description

2014 nî lūn-bûn

@nan

2014 թուականի Դեկտեմբերին հրատարակուած գիտական յօդուած

@hyw

2014 թվականի դեկտեմբերին հրատարակված գիտական հոդված

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2014年の論文

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2014年学术文章

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2014年学术文章

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2014年学术文章

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2014年学术文章

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2014年学术文章

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2014年學術文章

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Decelerated genome evolution i ...... s of multiple lancelet genomes

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Decelerated genome evolution i ...... s of multiple lancelet genomes

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Decelerated genome evolution i ...... s of multiple lancelet genomes

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Decelerated genome evolution i ...... s of multiple lancelet genomes

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Nature Communications

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Anlong Xu

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Fenfang Wu

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Guang Li

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Guangrui Huang

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Hongchen Zhao

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Jie Li

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Meiling Dong

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Pierre Antoine Pontarotti

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Ping Yang

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Qingyu Yan

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Initial sequencing and analysis of the human genome

The diploid genome sequence of an Asian individual

The oyster genome reveals stress adaptation and complexity of shell formation

The amphioxus genome and the evolution of the chordate karyotype

Tunicates and not cephalochordates are the closest living relatives of vertebrates

Gene ontology: tool for the unification of biology

KEGG: kyoto encyclopedia of genes and genomes

An ancient evolutionary origin of the Rag1/2 gene locus

Origin and evolution of the adaptive immune system: genetic events and selective pressures

MUSCLE: multiple sequence alignment with high accuracy and high throughput

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10.1038/NCOMMS6896

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