Computational analysis of bacterial RNA-Seq data - Test2 - elhamkhani - TriplyDB

Computational analysis of bacterial RNA-Seq data

Computational analysis of bacterial RNA-Seq data

http://www.wikidata.org/entity/Q28686251

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READemption-a tool for the computational analysis of deep-sequencing-based transcriptome data Global transcriptional start site mapping using differential RNA sequencing reveals novel antisense RNAs in Escherichia coli Assembly, Assessment, and Availability of De novo Generated Eukaryotic Transcriptomes Ecophysiology of an uncultivated lineage of Aigarchaeota from an oxic, hot spring filamentous 'streamer' community.Genome-wide analyses of small non-coding RNAs in streptococci Comprehensive mapping of the Escherichia coli flagellar regulatory network Global Analysis and Comparison of the Transcriptomes and Proteomes of Group A Streptococcus Biofilms Functional and Structural Analysis of a Highly-Expressed Yersinia pestis Small RNA following Infection of Cultured Macrophages Genome-wide gene expression and RNA half-life measurements allow predictions of regulation and metabolic behavior in Methanosarcina acetivorans Genome-Scale Mapping of Escherichia coli σ54 Reveals Widespread, Conserved Intragenic Binding OperomeDB: A Database of Condition-Specific Transcription Units in Prokaryotic Genomes Towards a computational model of a methane producing archaeum RNA sequencing uncovers antisense RNAs and novel small RNAs in Streptococcus pyogenes De novo assembly of bacterial transcriptomes from RNA-seq data.Analysis of strand-specific RNA-seq data using machine learning reveals the structures of transcription units in Clostridium thermocellum An empirical strategy to detect bacterial transcript structure from directional RNA-seq transcriptome data.Probiotic Bifidobacterium longum alters gut luminal metabolism through modification of the gut microbial community.REMap: Operon map of M. tuberculosis based on RNA sequence data Misincorporation by RNA polymerase is a major source of transcription pausing in vivo Iron-regulated small RNA expression as Neisseria gonorrhoeae FA 1090 transitions into stationary phase growth Identifying the Genes Responsible for Iron-Limited Condition in Riemerella anatipestifer CH-1 through RNA-Seq-Based Analysis.RNAseq Reveals Complex Response of Campylobacter jejuni to Ovine Bile and In vivo Gallbladder Environment.TargetRNA2: identifying targets of small regulatory RNAs in bacteria Construction of a fur null mutant and RNA-sequencing provide deeper global understanding of the Aliivibrio salmonicida Fur regulon Identification of sRNAs expressed by the human pathogen Neisseria gonorrhoeae under disparate growth conditions.Microbial genomic analysis reveals the essential role of inflammation in bacteria-induced colorectal cancer.T-REx: Transcriptome analysis webserver for RNA-seq Expression data Transcriptome-Wide Identification of Hfq-Associated RNAs in Brucella suis by Deep Sequencing.Transcriptome landscape of Lactococcus lactis reveals many novel RNAs including a small regulatory RNA involved in carbon uptake and metabolism.Photorhabdus-nematode symbiosis is dependent on hfq-mediated regulation of secondary metabolites.Streptomyces exploration is triggered by fungal interactions and volatile signals.FurA contributes to the oxidative stress response regulation of Mycobacterium avium ssp. paratuberculosis.Protein mistranslation protects bacteria against oxidative stress Transcriptome dynamics-based operon prediction in prokaryotes.Genome-scale metabolic network validation of Shewanella oneidensis using transposon insertion frequency analysis The master activator of IncA/C conjugative plasmids stimulates genomic islands and multidrug resistance dissemination Evaluation of metatranscriptomic protocols and application to the study of freshwater microbial communities.Whole-transcriptome sequencing for high-resolution transcriptomic analysis in Mycobacterium tuberculosis.Expression of heterologous sigma factors enables functional screening of metagenomic and heterologous genomic libraries The DnaA Protein Is Not the Limiting Factor for Initiation of Replication in Escherichia coli.

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Computational analysis of bacterial RNA-Seq data

http://www.wikidata.org/entity/Q28686251

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2013 nî lūn-bûn

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2013 թուականի Օգոստոսին հրատարակուած գիտական յօդուած

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2013 թվականի օգոստոսին հրատարակված գիտական հոդված

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2013年の論文

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2013年論文

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2013年論文

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2013年論文

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2013年論文

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2013年論文

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2013年论文

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name

Computational analysis of bacterial RNA-Seq data

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Computational analysis of bacterial RNA-Seq data

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Computational analysis of bacterial RNA-Seq data

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Computational analysis of bacterial RNA-Seq data

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Computational analysis of bacterial RNA-Seq data

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Computational analysis of bacterial RNA-Seq data

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Computational analysis of bacterial RNA-Seq data

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Computational analysis of bacterial RNA-Seq data

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Computational analysis of bacterial RNA-Seq data

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Nucleic Acids Research

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Computational analysis of bacterial RNA-Seq data

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Brian Tjaden

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Carin K Vanderpool

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Caroline A Genco

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Divya Balasubramanian

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Maksym Bobrovskyy

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Yan Sun

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Control of virulence by small RNAs in Streptococcus pneumoniae

Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Differential expression analysis for sequence count data

Mapping and quantifying mammalian transcriptomes by RNA-Seq

RNA-Seq: a revolutionary tool for transcriptomics

Rfam: Wikipedia, clans and the "decimal" release

RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)

The group A Streptococcus small regulatory RNA FasX enhances streptokinase activity by increasing the stability of the ska mRNA transcript

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

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10.1093/NAR/GKT444

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