PconsFold: improved contact predictions improve protein models
about
An Integrated Framework Advancing Membrane Protein Modeling and DesignGDFuzz3D: a method for protein 3D structure reconstruction from contact maps, based on a non-Euclidean distance functionMetaPSICOV: combining coevolution methods for accurate prediction of contacts and long range hydrogen bonding in proteins.Improving homology modeling of G-protein coupled receptors through multiple-template derived conserved inter-residue interactions.RBO Aleph: leveraging novel information sources for protein structure prediction.Customised fragments libraries for protein structure prediction based on structural class annotations.CONFOLD: Residue-residue contact-guided ab initio protein folding.Analysis of free modeling predictions by RBO aleph in CASP11.Combining Evolutionary Information and an Iterative Sampling Strategy for Accurate Protein Structure Prediction.Protein Residue Contacts and Prediction MethodsResidue contacts predicted by evolutionary covariance extend the application of ab initio molecular replacement to larger and more challenging protein folds.ConEVA: a toolbox for comprehensive assessment of protein contacts.A deep learning framework for improving long-range residue-residue contact prediction using a hierarchical strategy.Improved contact predictions using the recognition of protein like contact patternsContribution to the prediction of the fold code: application to immunoglobulin and flavodoxin cases.Comparative study of the effectiveness and limitations of current methods for detecting sequence coevolutionCoevolution Analysis of HIV-1 Envelope Glycoprotein Complex.The Maximum Entropy Fallacy Redux?COUSCOus: improved protein contact prediction using an empirical Bayes covariance estimator.ConKit: a python interface to contact predictions.EPSILON-CP: using deep learning to combine information from multiple sources for protein contact prediction.Conservation of coevolving protein interfaces bridges prokaryote-eukaryote homologies in the twilight zone.Potential DNA binding and nuclease functions of ComEC domains characterized in silico.Predicting the helix-helix interactions from correlated residue mutations.Predicting accurate contacts in thousands of Pfam domain families using PconsC3.cooccurNet: an R package for co-occurrence network construction and analysis.New encouraging developments in contact prediction: Assessment of the CASP11 results.Sequence specificity between interacting and non-interacting homologs identifies interface residues--a homodimer and monomer use case.Observation selection bias in contact prediction and its implications for structural bioinformaticsDNCON2: Improved protein contact prediction using two-level deep convolutional neural networks.Assessment of contact predictions in CASP12: co-evolution and deep learning coming of age.Large-scale structure prediction by improved contact predictions and model quality assessment.Approaches to ab initio molecular replacement of α-helical transmembrane proteins.CONFOLD2: improved contact-driven ab initio protein structure modeling.Finding the needle in the haystack: towards solving the protein-folding problem computationally.Biomolecular coevolution and its applications: Going from structure prediction toward signaling, epistasis, and function.bbcontacts: prediction of β-strand pairing from direct coupling patterns.Identification of residue pairing in interacting β-strands from a predicted residue contact map.Characterization of C-ring component assembly in flagellar motors from amino acid coevolution.MISTIC2: comprehensive server to study coevolution in protein families.
P2860
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P2860
PconsFold: improved contact predictions improve protein models
description
2014 nî lūn-bûn
@nan
2014 թուականի Սեպտեմբերին հրատարակուած գիտական յօդուած
@hyw
2014 թվականի սեպտեմբերին հրատարակված գիտական հոդված
@hy
2014年の論文
@ja
2014年論文
@yue
2014年論文
@zh-hant
2014年論文
@zh-hk
2014年論文
@zh-mo
2014年論文
@zh-tw
2014年论文
@wuu
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PconsFold: improved contact predictions improve protein models
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PconsFold: improved contact predictions improve protein models
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type
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PconsFold: improved contact predictions improve protein models
@ast
PconsFold: improved contact predictions improve protein models
@en
prefLabel
PconsFold: improved contact predictions improve protein models
@ast
PconsFold: improved contact predictions improve protein models
@en
P2860
P50
P3181
P356
P1433
P1476
PconsFold: improved contact predictions improve protein models
@en
P2093
Arne Elofsson
Mirco Michel
P2860
P304
P3181
P356
10.1093/BIOINFORMATICS/BTU458
P407
P577
2014-09-01T00:00:00Z