Efficient Exact Stochastic Simulation of Chemical Systems with Many Species and Many Channels
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Delay-induced stochastic oscillations in gene regulationEvaluating the effectiveness of localized control strategies to curtail chikungunyaExact and approximate stochastic simulation of intracellular calcium dynamicsMEDYAN: Mechanochemical Simulations of Contraction and Polarity Alignment in Actomyosin NetworksStable, precise, and reproducible patterning of bicoid and hunchback molecules in the early Drosophila embryoAccurate hybrid stochastic simulation of a system of coupled chemical or biochemical reactionsA new class of highly efficient exact stochastic simulation algorithms for chemical reaction networksA partial-propensity variant of the composition-rejection stochastic simulation algorithm for chemical reaction networksA constant-time kinetic Monte Carlo algorithm for simulation of large biochemical reaction networksRecycling random numbers in the stochastic simulation algorithmExact stochastic simulation of coupled chemical reactions with delaysA partial-propensity formulation of the stochastic simulation algorithm for chemical reaction networks with delaysOptimal signal processing in small stochastic biochemical networksStochastic model of integrin-mediated signaling and adhesion dynamics at the leading edges of migrating cells.Temperature control of fimbriation circuit switch in uropathogenic Escherichia coli: quantitative analysis via automated model abstractionTrade-offs and constraints in allosteric sensingMulti-scale stochastic simulation of diffusion-coupled agents and its application to cell culture simulationModular design of artificial tissue homeostasis: robust control through synthetic cellular heterogeneityMulti-dimensional, mesoscopic Monte Carlo simulations of inhomogeneous reaction-drift-diffusion systems on graphics-processing unitsChemical memory reactions induced bursting dynamics in gene expressionThe interplay of intrinsic and extrinsic bounded noises in biomolecular networksSimulation of E. coli gene regulation including overlapping cell cycles, growth, division, time delays and noiseA scalable computational framework for establishing long-term behavior of stochastic reaction networksDirect solution of the Chemical Master Equation using quantized tensor trainscuTauLeaping: a GPU-powered tau-leaping stochastic simulator for massive parallel analyses of biological systemsExact hybrid particle/population simulation of rule-based models of biochemical systemsAccelerated Sensitivity Analysis in High-Dimensional Stochastic Reaction NetworksA Hybrid of the Chemical Master Equation and the Gillespie Algorithm for Efficient Stochastic Simulations of Sub-NetworksTemporal Gillespie Algorithm: Fast Simulation of Contagion Processes on Time-Varying NetworksA hybrid continuous-discrete method for stochastic reaction-diffusion processesComparison of Parameter Estimation Methods in Stochastic Chemical Kinetic Models: Examples in Systems BiologyDynamic periplasmic chaperone reservoir facilitates biogenesis of outer membrane proteins.Hybrid pathwise sensitivity methods for discrete stochastic models of chemical reaction systems.Lazy Updating of hubs can enable more realistic models by speeding up stochastic simulationsInference for discretely observed stochastic kinetic networks with applications to epidemic modeling.Spatial stochastic modelling of the Hes1 gene regulatory network: intrinsic noise can explain heterogeneity in embryonic stem cell differentiation.Lattice Microbes: high-performance stochastic simulation method for the reaction-diffusion master equation.MONALISA for stochastic simulations of Petri net models of biochemical systems.Developing complex signaling models using GENESIS/Kinetikit.Phenotypic evolutionary models in stem cell biology: replacement, quiescence, and variability
P2860
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P2860
Efficient Exact Stochastic Simulation of Chemical Systems with Many Species and Many Channels
description
2000 թուականի Մարտին հրատարակուած գիտական յօդուած
@hyw
2000 թվականի մարտին հրատարակված գիտական հոդված
@hy
artículu científicu espublizáu en 2000
@ast
im März 2000 veröffentlichter wissenschaftlicher Artikel
@de
scientific article (publication date: March 2000)
@en
wetenschappelijk artikel (gepubliceerd in 2000-03)
@nl
наукова стаття, опублікована в березні 2000
@uk
مقالة علمية (نشرت في مارس 2000)
@ar
name
Efficient Exact Stochastic Sim ...... Many Species and Many Channels
@ast
Efficient Exact Stochastic Sim ...... Many Species and Many Channels
@en
type
label
Efficient Exact Stochastic Sim ...... Many Species and Many Channels
@ast
Efficient Exact Stochastic Sim ...... Many Species and Many Channels
@en
prefLabel
Efficient Exact Stochastic Sim ...... Many Species and Many Channels
@ast
Efficient Exact Stochastic Sim ...... Many Species and Many Channels
@en
P3181
P356
P1476
Efficient Exact Stochastic Sim ...... Many Species and Many Channels
@en
P2093
Jehoshua Bruck
Michael A. Gibson
P304
P3181
P356
10.1021/JP993732Q
P407
P577
2000-03-01T00:00:00Z