Separation of phylogenetic and functional associations in biological sequences by using the parametric bootstrap - Test2 - elhamkhani - TriplyDB

Separation of phylogenetic and functional associations in biological sequences by using the parametric bootstrap

Separation of phylogenetic and functional associations in biological sequences by using the parametric bootstrap

http://www.wikidata.org/entity/Q29544639

about

sameAs

Disentangling direct from indirect co-evolution of residues in protein alignments Computational enzyme design approaches with significant biological outcomes: progress and challenges Direct-coupling analysis of residue coevolution captures native contacts across many protein families Distinguishing functional amino acid covariation from background linkage disequilibrium in HIV protease and reverse transcriptase Prevalence of epistasis in the evolution of influenza A surface proteins Correlations among amino acid sites in bHLH protein domains: an information theoretic analysis.Context dependence and coevolution among amino acid residues in proteins.Emerging Computational Methods for the Rational Discovery of Allosteric Drugs.Reducing the false positive rate in the non-parametric analysis of molecular coevolution.Using inferred residue contacts to distinguish between correct and incorrect protein models Covariation Is a Poor Measure of Molecular Coevolution.Correction for phylogeny, small number of observations and data redundancy improves the identification of coevolving amino acid pairs using mutual information.Sequence coevolution between RNA and protein characterized by mutual information between residue triplets How much data are needed to resolve a difficult phylogeny?: case study in Lamiales.HMM-ModE--improved classification using profile hidden Markov models by optimising the discrimination threshold and modifying emission probabilities with negative training sequences Leveraging hierarchical population structure in discrete association studies.Coevolution in defining the functional specificity.Detecting coevolution without phylogenetic trees? Tree-ignorant metrics of coevolution perform as well as tree-aware metrics.Analysing the origin of long-range interactions in proteins using lattice models.Identification of coevolving residues and coevolution potentials emphasizing structure, bond formation and catalytic coordination in protein evolution Correlated mutation analysis on the catalytic domains of serine/threonine protein kinases.Trade-off between positive and negative design of protein stability: from lattice models to real proteins.Structural and functional roles of coevolved sites in proteins.Identifying and seeing beyond multiple sequence alignment errors using intra-molecular protein covariation Solving the protein sequence metric problem.Finding important sites in protein sequences Accurate discrimination of bHLH domains in plants, animals, and fungi using biologically meaningful sites.Coupled mutation finder: a new entropy-based method quantifying phylogenetic noise for the detection of compensatory mutations Accurate simulation and detection of coevolution signals in multiple sequence alignments.Amino acids determining enzyme-substrate specificity in prokaryotic and eukaryotic protein kinases.Did α-Synuclein and Glucocerebrosidase Coevolve? Implications for Parkinson's Disease.Coevolutionary analyses require phylogenetically deep alignments and better null models to accurately detect inter-protein contacts within and between species.Assembly constraints drive co-evolution among ribosomal constituents.Phylogenetic analysis and classification of the fungal bHLH domain.Computational Analysis of Residue Interaction Networks and Coevolutionary Relationships in the Hsp70 Chaperones: A Community-Hopping Model of Allosteric Regulation and Communication Mutual information and variants for protein domain-domain contact prediction.Why should we care about molecular coevolution?Spectral analysis of sequence variability in basic-helix-loop-helix (bHLH) protein domains Detecting coevolving positions in a molecule: why and how to account for phylogeny.A survey on prediction of specificity-determining sites in proteins.

P2860

Q21563484-E42236C4-EDBF-4B88-9048-75A98D6D6E20 Q24273262-16F48007-CFCA-44BF-9C9A-33664CBC05DF Q24627074-4837CDC1-F4EB-40C2-8C68-0D8E922322B9 Q28469282-794AC3C9-7070-4ADD-92B2-ECCC73BE9B41 Q28477179-CBD2B07E-8D93-4073-8465-62514645482D Q30011142-5CC82FBC-0C83-4423-B998-C431607A84F2 Q30350655-FE736038-3F9F-4688-8157-286BEF6738FC Q30358225-1146C89C-983C-44A6-8F84-0C3EF1B90C99 Q30368774-647201F5-E34E-467E-B549-F12B0177BF00 Q30369660-96864921-3842-47E0-8B31-7035FB2FEB8D Q30374414-82F47B63-0C4C-4750-96AC-2BEF5A1C9B2F Q30375462-FF4EBBF6-3AB5-4C4C-A452-358364D43139 Q30412218-8B9BBAC6-A897-4E89-9F07-72865C9D974E Q31008068-CFE1BB4D-7947-4A52-814E-E99274505D25 Q33280167-9E7B0840-62C6-40BC-9279-1F6F1B613366 Q33289961-8F5140B5-FCD9-4B4C-8637-92EE71D0AB44 Q33373404-412242B8-72C6-4B31-87E4-7B2985C45287 Q33389536-DDC65EAB-4A33-409F-97DE-3C7602A10A74 Q33403910-1FEAAAA5-4430-4069-B492-2D08900A3451 Q33416424-FE8D72AA-9CA5-4FE9-94FD-D54C3B2286C2 Q33467381-B671299A-7325-46E9-92E7-18FE2EB5700C Q33518462-3EF07752-CEC3-4AA7-A071-744F02D52D6F Q33523274-762D9AC1-76A3-4D42-B46F-5B4F07E3ADF2 Q33623719-805700EC-E9DE-4198-8DE2-EE1C817DA443 Q33772010-2811FAA6-5B1C-47AA-B896-4AD317AA5A4D Q34379449-D9EE86A1-F49C-4A7D-92E1-C18BE8EDEF54 Q34392946-D4E96312-6716-4391-A05B-1255AF56DCFD Q34410131-CADFA866-E56B-4291-9944-C06FF5069D1D Q34455146-E5B774E7-EAEA-4291-9FD4-CFFC586AE160 Q34957027-B5503195-FCAB-428B-B002-250F46689A20 Q35716090-2F2C7E3B-2CEB-480C-A130-8179A3FE54EE Q35754130-D0A09C37-1123-4C96-8D52-2B4CFAE1FE3C Q35770682-6D1E13FF-96B4-4EF0-ACA3-1B906C416178 Q35919894-29316461-96E3-4AA0-B939-53AAAC62529E Q36251118-9AD6231E-E8F4-4082-8EEB-544C4F814F8D Q36493731-FBCDB8E0-7A4D-43AB-B58F-53C31C1B697C Q37037782-FA4AEBAD-D242-421C-8B62-CF4F204515B6 Q37173119-B74D824E-CD9C-49BD-B088-98E0BC3B481B Q37939077-7EE7A058-5E12-4449-850D-7CF17B37204B Q38177613-44DBE5F9-80F3-4551-9A1C-DE41C77AFDED

P2860

Separation of phylogenetic and functional associations in biological sequences by using the parametric bootstrap

http://www.wikidata.org/entity/Q29544639

description

2000 nî lūn-bûn

@nan

2000 թուականի Մարտին հրատարակուած գիտական յօդուած

@hyw

2000 թվականի մարտին հրատարակված գիտական հոդված

@hy

2000年の論文

@ja

2000年論文

@yue

2000年論文

@zh-hant

2000年論文

@zh-hk

2000年論文

@zh-mo

2000年論文

@zh-tw

2000年论文

@wuu

name

Separation of phylogenetic and ...... using the parametric bootstrap

@ast

Separation of phylogenetic and ...... using the parametric bootstrap

@en

type

label

Separation of phylogenetic and ...... using the parametric bootstrap

@ast

Separation of phylogenetic and ...... using the parametric bootstrap

@en

altLabel

Separation of phylogenetic and ...... sing the parametric bootstrap.

@en

prefLabel

Separation of phylogenetic and ...... using the parametric bootstrap

@ast

Separation of phylogenetic and ...... using the parametric bootstrap

@en

P1433

Q29544639-992AE221-EA80-465E-8385-8080BBF4221E

P1476

Q29544639-059033C8-54AA-480A-A79B-A61C4881985D

Q29544639-58D613A2-2DC4-460E-9680-850235304CF4

P2093

Q29544639-01886C22-E5B4-4257-A6D9-DB4D790FEA3D

Q29544639-374163B2-E549-4EBD-AC87-5806402BD1C9

Q29544639-4CC92C6A-DDE7-45D5-B02E-FBD83A2A01C0

Q29544639-892DD688-E61A-4AAA-A3E8-1645415DD2FC

P2860

Q29544639-01C10596-73D7-4751-B61F-DC4870D38261

Q29544639-0E71A9BD-8816-40E4-941E-61FC83792A9D

Q29544639-0F7ED6C4-3486-4EDC-AC79-00EEC0207B0F

Q29544639-34EE96B2-4C2F-43E8-A112-72F4E1B771C0

Q29544639-4E1AC92A-1148-475B-A2C6-BEA5D1607539

Q29544639-6820CEEC-0DEF-46D9-9D3B-0FA869878747

Q29544639-6D0DBE85-324B-4C5F-9AD9-E9EE77B17B4D

Q29544639-7596B257-5E69-4FF3-9817-7D0E6D158033

Q29544639-815093F1-B305-4E94-BB62-ED570FCBEFD3

Q29544639-85C4F375-CE51-47B4-BB44-BBA35DF59E72

P304

Q29544639-54113717-1D24-408F-9AC3-F9AF272B6E77

P31

Q29544639-DB854660-6C04-40AE-8B10-AB893248BB57

P356

Q29544639-56F0EE94-6F2F-4EBF-B538-656704CE8751

P407

Q29544639-4D844611-08EC-4343-AA34-20DEBAF8511D

P433

Q29544639-0F60B9CF-C2D9-4462-BB35-2263E2FC72B6

P478

Q29544639-EFF13E35-0CA9-47F8-AE7B-6C7F5B754651

P577

Q29544639-0156BB3A-33BE-4CDF-9525-301A065AC81F

Q29544639-186BEEFE-CCEC-4396-A263-C799DD4A180C

P698

Q29544639-C366DA97-C37B-407D-8BB5-78C7B2B2738D

P921

Q29544639-1EC94187-6B7F-433B-948D-5B06A39D3591

P932

Q29544639-8B4EDCA6-1AA0-428B-8CA7-090235407448

P356

P1433

Proceedings of the National Academy of Sciences of the United States of America

P1476

Separation of phylogenetic and ...... using the parametric bootstrap

@en

Separation of phylogenetic and ...... sing the parametric bootstrap.

@en

P2093

K R Wollenberg

http://www.w3.org/2001/XMLSchema#string

K. R. Wollenberg

http://www.w3.org/2001/XMLSchema#string

W R Atchley

http://www.w3.org/2001/XMLSchema#string

W. R. Atchley

http://www.w3.org/2001/XMLSchema#string

P2860

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

Crystal structure of PHO4 bHLH domain-DNA complex: flanking base recognition

Structure and function of the b/HLH/Z domain of USF

A natural classification of the basic helix-loop-helix class of transcription factors

Correlated mutations and residue contacts in proteins

The neighbor-joining method: a new method for reconstructing phylogenetic trees

Crystal structure of MyoD bHLH domain-DNA complex: perspectives on DNA recognition and implications for transcriptional activation

Recognition by Max of its cognate DNA through a dimeric b/HLH/Z domain

Co-crystal structure of sterol regulatory element binding protein 1a at 2.3 A resolution

A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

P304

3288-3291

http://www.w3.org/2001/XMLSchema#string

P31

scholarly article

P356

10.1073/PNAS.97.7.3288

http://www.w3.org/2001/XMLSchema#string

P407

P433

7

http://www.w3.org/2001/XMLSchema#string

P478

97

http://www.w3.org/2001/XMLSchema#string

P577

2000-03-01T00:00:00Z

http://www.w3.org/2001/XMLSchema#dateTime

2000-03-28T00:00:00Z

http://www.w3.org/2001/XMLSchema#dateTime

P698

10725404

http://www.w3.org/2001/XMLSchema#string

P921

P932

16231

http://www.w3.org/2001/XMLSchema#string