Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified - Test2 - elhamkhani - TriplyDB

Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified

Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified

http://www.wikidata.org/entity/Q29617331

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Can environment predict cryptic diversity? The case of Niphargus inhabiting Western Carpathian groundwater Multiple geographic origins of commensalism and complex dispersal history of Black Rats The complete chloroplast and mitochondrial genome sequences of Boea hygrometrica: insights into the evolution of plant organellar genomes Molecular and phenotypic evidence of a new species of genus Esox (Esocidae, Esociformes, Actinopterygii): the southern pike, Esox flaviae Evolutionary history of the iroquois/Irx genes in metazoans Nosema ceranae escapes fumagillin control in honey bees Haemoproteus iwa in Great Frigatebirds (Fregata minor) in the Islands of the Western Indian Ocean The role of historical barriers in the diversification processes in open vegetation formations during the Miocene/Pliocene using an ancient rodent lineage as a model Phylogenetic relationships of Palaearctic Formica species (Hymenoptera, Formicidae) based on mitochondrial cytochrome B sequences Mitochondrial genome sequences effectively reveal the phylogeny of Hylobates gibbons A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans Redescription of two subterranean amphipods Niphargusmolnari Méhely, 1927 and Niphargusgebhardti Schellenberg, 1934 (Amphipoda, Niphargidae) and their phylogenetic position Climate-driven diversification in two widespread Galerida larks.Phylogenetic analysis of mitochondrial protein coding genes confirms the reciprocal paraphyly of Hexapoda and Crustacea A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis Multiple chromosomal rearrangements structured the ancestral vertebrate Hox-bearing protochromosomes Comparative chloroplast genomics and phylogenetics of Fagopyrum esculentum ssp. ancestrale -a wild ancestor of cultivated buckwheat Genomics of Loa loa, a Wolbachia-free filarial parasite of humans Neolithic mitochondrial haplogroup H genomes and the genetic origins of Europeans Genetic divergence and geographical variation in the deep-water Conus orbignyi complex (Mollusca: Conoidea)PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions Molecular epidemiology of human coronavirus OC43 reveals evolution of different genotypes over time and recent emergence of a novel genotype due to natural recombination Yeast forms dominate fungal diversity in the deep oceans Pathogen evolution and disease emergence in carnivores Characterization of pro-inflammatory flagellin proteins produced by Lactobacillus ruminis and related motile Lactobacilli Characterization of a Single Genomic Locus Encoding the Clustered Protocadherin Receptor Diversity in Xenopus tropicalis.Vitamin B2 as a virulence factor in Pseudogymnoascus destructans skin infection Evidence of recombination in Hepatitis C Virus populations infecting a hemophiliac patient The two tryptophans of β2-microglobulin have distinct roles in function and folding and might represent two independent responses to evolutionary pressure Planar substrate-binding site dictates the specificity of ECF-type nickel/cobalt transporters Evolution and architecture of the inner membrane complex in asexual and sexual stages of the malaria parasite The ring of life hypothesis for eukaryote origins is supported by multiple kinds of data Radiation of extant cetaceans driven by restructuring of the oceans.Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse The Complete Maternally and Paternally Inherited Mitochondrial Genomes of a Freshwater Mussel Potamilus alatus (Bivalvia: Unionidae)A broad distribution of the alternative oxidase in microsporidian parasites Identification and characterization of a novel calcium-activated apyrase from Cryptosporidium parasites and its potential role in pathogenesis Extensive genetic diversity, unique population structure and evidence of genetic exchange in the sexually transmitted parasite Trichomonas vaginalis HIV behind bars: human immunodeficiency virus cluster analysis and drug resistance in a reference correctional unit from southern Brazil Pro-inflammatory flagellin proteins of prevalent motile commensal bacteria are variably abundant in the intestinal microbiome of elderly humans

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P2860

Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified

http://www.wikidata.org/entity/Q29617331

description

2006 nî lūn-bûn

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2006 թուականի Մարտին հրատարակուած գիտական յօդուած

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2006 թվականի մարտին հրատարակված գիտական հոդված

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2006年の論文

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2006年論文

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Assessment of methods for amin ...... ce of matrix are not justified

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Assessment of methods for amin ...... ce of matrix are not justified

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Assessment of methods for amin ...... ce of matrix are not justified

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BMC Evolutionary Biology

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James O Mclnerney

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Melissa M Pentony

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Thomas J Naughton

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P2860

Model selection and model averaging in phylogenetics: advantages of akaike information criterion and bayesian approaches over likelihood ratio tests

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

Amino acid substitution matrices from protein blocks

Archaeal phylogeny based on proteins of the transcription and translation machineries: tackling the Methanopyrus kandleri paradox

Basic local alignment search tool

A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach

ProtTest: selection of best-fit models of protein evolution

The rapid generation of mutation data matrices from protein sequences

Evolutionary trees from DNA sequences: a maximum likelihood approach

Dating of the human-ape splitting by a molecular clock of mitochondrial DNA

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216817

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10.1186/1471-2148-6-29

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Christopher J. Creevey

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1011735536

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16563161

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1435933

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