Protein folding mediated by solvation: water expulsion and formation of the hydrophobic core occur after the structural collapse - Test2 - elhamkhani - TriplyDB

Protein folding mediated by solvation: water expulsion and formation of the hydrophobic core occur after the structural collapse

Protein folding mediated by solvation: water expulsion and formation of the hydrophobic core occur after the structural collapse

http://www.wikidata.org/entity/Q30167659

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Atomic interaction networks in the core of protein domains and their native folds MD Simulations of tRNA and Aminoacyl-tRNA Synthetases: Dynamics, Folding, Binding, and Allostery Steric interactions lead to collective tilting motion in the ribosome during mRNA-tRNA translocation Origins of Chevron Rollovers in Non-Two-State Protein Folding Kinetics Solvation in protein folding analysis: Combination of theoretical and experimental approaches Structural Rigidity of a Large Cavity-containing Protein Revealed by High-pressure Crystallography Optical Detection of Disordered Water within a Protein Cavity Arabinose 5-phosphate covalently inhibits transaldolase Cardiac Troponin and Tropomyosin: Structural and Cellular Perspectives to Unveil the Hypertrophic Cardiomyopathy Phenotype Exploring the composition of protein-ligand binding sites on a large scale Constructing sequence-dependent protein models using coevolutionary information.Sparsely populated folding intermediates of the Fyn SH3 domain: matching native-centric essential dynamics and experiment Multiple folding pathways of the SH3 domain.Transition states for protein folding have native topologies despite high structural variability.Formation of the folding nucleus of an SH3 domain investigated by loosely coupled molecular dynamics simulations.Posttransition state desolvation of the hydrophobic core of the src-SH3 protein domain Probing the folding free energy landscape of the Src-SH3 protein domain.Water in protein structure prediction Learning To Fold Proteins Using Energy Landscape Theory.Frequent side chain methyl carbon-oxygen hydrogen bonding in proteins revealed by computational and stereochemical analysis of neutron structures.Hydrophobe-water interactions: methane as a model Visualizing water molecules in transmembrane proteins using radiolytic labeling methods.Theoretical Insights into the Biophysics of Protein Bi-stability and Evolutionary Switches.WATsite2.0 with PyMOL Plugin: Hydration Site Prediction and Visualization.Do hydration dynamics follow the structural perturbation during thermal denaturation of a protein: a terahertz absorption study.Dissecting the THz spectrum of liquid water from first principles via correlations in time and space.Folding of the four-helix bundle FF domain from a compact on-pathway intermediate state is governed predominantly by water motion.Thermal unfolding of barstar and the properties of interfacial water around the unfolded forms.Trp-cage: folding free energy landscape in explicit water.A hypothesis to reconcile the physical and chemical unfolding of proteins.Progressive dry-core-wet-rim hydration trend in a nested-ring topology of protein binding interfaces.Sampling the multiple folding mechanisms of Trp-cage in explicit solvent Single-molecule dynamics reveals cooperative binding-folding in protein recognition Protein aggregation/crystallization and minor structural changes: universal versus specific aspects.Src kinase conformational activation: thermodynamics, pathways, and mechanisms.Study of a nanoscale water cluster by atomic force microscopy.Kinetic spectroscopy of heme hydration and ligand binding in myoglobin and isolated hemoglobin chains: an optical window into heme pocket water dynamics.Simulations of the role of water in the protein-folding mechanism.Folding a protein in a computer: an atomic description of the folding/unfolding of protein A.Competition between native topology and nonnative interactions in simple and complex folding kinetics of natural and designed proteins.

P2860

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P2860

Protein folding mediated by solvation: water expulsion and formation of the hydrophobic core occur after the structural collapse

http://www.wikidata.org/entity/Q30167659

description

2002 nî lūn-bûn

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2002 թուականի Յունուարին հրատարակուած գիտական յօդուած

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2002 թվականի հունվարին հրատարակված գիտական հոդված

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2002年の論文

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name

Protein folding mediated by so ...... after the structural collapse

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Protein folding mediated by so ...... after the structural collapse

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Protein folding mediated by so ...... after the structural collapse

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Protein folding mediated by so ...... after the structural collapse

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P1433

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Proceedings of the National Academy of Sciences of the United States of America

P1476

Protein folding mediated by so ...... after the structural collapse

@en

P2093

Angel E García

http://www.w3.org/2001/XMLSchema#string

Margaret S Cheung

http://www.w3.org/2001/XMLSchema#string

P2860

Multicanonical ensemble: A new approach to simulate first-order phase transitions

Protein folding funnels: a kinetic approach to the sequence-structure relationship

Contribution of physical chemistry to an understanding of protein structure and function

Crystal structure of a Src-homology 3 (SH3) domain

Obligatory steps in protein folding and the conformational diversity of the transition state

From Levinthal to pathways to funnels

From folding theories to folding proteins: a review and assessment of simulation studies of protein folding and unfolding.

Circular dichroic investigation of the native and non-native conformational states of the growth factor receptor-binding protein 2 N-terminal src homology domain 3: effect of binding to a proline-rich peptide from guanine nucleotide exchange factor.

Native topology determines force-induced unfolding pathways in globular proteins.

Experiment and theory highlight role of native state topology in SH3 folding.

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685-690

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10.1073/PNAS.022387699

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2

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99

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2002-01-01T00:00:00Z

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11554448

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11805324

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cond-mat/0204014

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protein folding

P932

117366

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