Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes - Test2 - elhamkhani - TriplyDB

Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes

Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes

http://www.wikidata.org/entity/Q30463597

about

Structure, function and diversity of the healthy human microbiome Use of Metatranscriptomics in Microbiome Research How to Predict Molecular Interactions between Species?Using "Omics" and Integrated Multi-Omics Approaches to Guide Probiotic Selection to Mitigate Chytridiomycosis and Other Emerging Infectious Diseases High-throughput metagenomic technologies for complex microbial community analysis: open and closed formats A Graph-Centric Approach for Metagenome-Guided Peptide and Protein Identification in Metaproteomics Avoidance of stochastic RNA interactions can be harnessed to control protein expression levels in bacteria and archaea Discovery and validation of novel and distinct RNA regulators for ribosomal protein S15 in diverse bacterial phyla TSSAR: TSS annotation regime for dRNA-seq data.Utilizing de Bruijn graph of metagenome assembly for metatranscriptome analysis The bovine milk microbiota: insights and perspectives from -omics studies.A next generation sequencing-based method to study the intra-host genetic diversity of norovirus in patients with acute and chronic infection.Studying the microbiology of the indoor environment.Comparison of library preparation methods reveals their impact on interpretation of metatranscriptomic data.Characterization of CRISPR RNA transcription by exploiting stranded metatranscriptomic data.Community-wide transcriptome of the oral microbiome in subjects with and without periodontitis Selective and flexible depletion of problematic sequences from RNA-seq libraries at the cDNA stage.Relating the metatranscriptome and metagenome of the human gut.Hierarchical expression of genes controlled by the Bacillus subtilis global regulatory protein CodY.A dual-species co-cultivation system to study the interactions between Roseobacters and dinoflagellates.The promise of single-cell sequencing.Intracellular concentrations of 65 species of transcription factors with known regulatory functions in Escherichia coli.Gene finding in metatranscriptomic sequences.Comparative analysis of RNA sequencing methods for degraded or low-input samples.How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes?Chapter 12: Human microbiome analysis Consequences of normalizing transcriptomic and genomic libraries of plant genomes using a duplex-specific nuclease and tetramethylammonium chloride.A comprehensive metatranscriptome analysis pipeline and its validation using human small intestine microbiota datasets.Simultaneous transcriptional profiling of bacteria and their host cells RNA-seq analysis identifies new genes regulated by the histone-like nucleoid structuring protein (H-NS) affecting Vibrio cholerae virulence, stress response and chemotaxis.Comprehensive insights into transcriptional adaptation of intracellular mycobacteria by microbe-enriched dual RNA sequencing Interplay of host microbiota, genetic perturbations, and inflammation promotes local development of intestinal neoplasms in mice The whole set of constitutive promoters recognized by RNA polymerase RpoD holoenzyme of Escherichia coli.Metatranscriptomic analysis of arctic peat soil microbiota.Improving the genetic representation of rare taxa within complex microbial communities using DNA normalization methods.Functional optimization of gene clusters by combinatorial design and assembly.Simultaneous generation of many RNA-seq libraries in a single reaction Evaluation of metatranscriptomic protocols and application to the study of freshwater microbial communities.Functional dynamics of the gut microbiome in elderly people during probiotic consumption.Sequencing and beyond: integrating molecular 'omics' for microbial community profiling.

P2860

Q24626370-354404EC-45B3-4FF9-A09D-D6FC2E3513CD Q26749065-09C4838B-4F9A-443E-825D-B30011816EBB Q26749581-7C2CF997-B859-4C0A-806D-AAC0AB062598 Q26766432-3A4A563F-9A51-4F46-8705-87E6B22AAB5F Q26824148-D19AAA70-257D-4F41-A062-EF1F0C8D52A8 Q28554789-35E3EB75-32DD-4337-B9D8-BD143B796E9B Q28595573-D592BACF-A445-45C9-834B-64A96D427121 Q28654461-CB52C2F0-F397-4131-BC5A-4DF34DEE5F87 Q28655699-727CA702-9F6A-4B85-8579-5531E1E308B9 Q28828749-23710BB3-3EA5-403D-954B-480BCDB939FD Q30250211-F578B74A-6F46-4A45-AEEB-E25CC7572C30 Q30390009-64A86B73-D3BA-4618-9F86-1CA7F79998F1 Q30392209-0266C4D8-2F34-41F1-9CE9-7B0A8D708C2C Q30863143-9B498C1B-BBC2-4EB7-B650-7F897D3440E2 Q31096987-5B76C799-4CA9-4F17-9867-F7319C0027F8 Q31152721-0778F287-6254-426D-A1CE-43607828778C Q33712723-EF0E9C74-99CD-4A83-8697-BCB2DDFF2BF1 Q33730723-852C248A-B489-43A0-8FC9-A8D97317BA3F Q33730757-C8BA566E-A51F-4FB7-B8F4-8F755F662D92 Q33802559-9754793E-ACB8-4AF8-B0AC-01DCA2C37F81 Q34039873-A82BD782-CE47-4B04-9FEB-55A8A7B1CD8B Q34056806-EB3F3ADA-F6D5-48B3-B53A-A04494A18A4D Q34211294-DE6DC3E1-795C-44ED-B485-5BF72E0B67E3 Q34345427-E535A63E-EFD9-4C5A-ACF4-B0DD03173739 Q34523883-6913632A-FFEF-4D85-9749-076922E80EED Q34539646-85427CD3-E894-4ACF-A25E-F123A70D1DEB Q34586452-346CAADA-BCB1-40D5-BE01-75030C016F5D Q34894431-8932D3DC-62C6-4629-AD9B-8A327B819856 Q35063762-BC40E6F7-B324-4E9D-99B7-EE9538FFA306 Q35094995-9ED7B521-7821-42ED-8890-6D32F4FCB8EF Q35102514-CC33A8F0-AD39-400F-A96D-4846C2846A5D Q35109824-FCF38784-3DBC-4271-8D2C-55A7EFE58A52 Q35113090-0A5FAC82-72F1-46A0-A026-1EFC9E9A0DE6 Q35205831-3B96BEA2-E34E-4AF0-A0C3-EC89F70037E5 Q35232502-CC91415F-F72C-4DA8-97FC-8B27135006BB Q35445581-2FB7936E-743C-48BB-B41D-ADE9B493B09B Q35570028-0849FA01-EC74-4846-9055-FD3367E06D07 Q35574375-8FACEEE5-7276-49DF-A66A-E9FF9FF52A94 Q35601233-6EB0D4BA-27CA-4540-95B3-EED20EF35CAB Q35615383-E9FA3F2B-1331-4D37-9863-C36A67EC869F

P2860

Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes

http://www.wikidata.org/entity/Q30463597

description

2012 nî lūn-bûn

@nan

2012 թուականի Յունուարին հրատարակուած գիտական յօդուած

@hyw

2012 թվականի հունվարին հրատարակված գիտական հոդված

@hy

2012年の論文

@ja

2012年論文

@yue

2012年論文

@zh-hant

2012年論文

@zh-hk

2012年論文

@zh-mo

2012年論文

@zh-tw

2012年论文

@wuu

name

Efficient and robust RNA-seq p ...... mplex community transcriptomes

@ast

Efficient and robust RNA-seq p ...... mplex community transcriptomes

@en

type

label

Efficient and robust RNA-seq p ...... mplex community transcriptomes

@ast

Efficient and robust RNA-seq p ...... mplex community transcriptomes

@en

prefLabel

Efficient and robust RNA-seq p ...... mplex community transcriptomes

@ast

Efficient and robust RNA-seq p ...... mplex community transcriptomes

@en

P1433

Q30463597-F45671C2-1482-4E19-9DCC-34130D8B13F5

P1476

Q30463597-54383D6F-2D08-406F-A4FA-74DDEAC20BDC

P2093

Q30463597-1EB46347-DCE1-4A12-9EE4-7365F71D10E6

Q30463597-2D243144-431A-41AB-A5C1-20A0195B664E

Q30463597-37BDE5FD-5F0A-452C-9869-5A4D4C52D0AE

Q30463597-51BD691D-0971-4636-A773-11529205EE95

Q30463597-7BCBEEBC-9815-4780-83AE-895B7F2CB23C

Q30463597-8BCCE5C1-72AA-4DFD-90AA-2C1399E92069

Q30463597-B6BDBC26-85BC-4B74-BC18-47CF9718148D

Q30463597-DD7F0036-456A-4C48-9270-A504A6AFD78A

P2860

Q30463597-024BED91-CA91-4F8B-AA03-87FD26C9F9FC

Q30463597-03F5F845-A008-4DD7-A570-6843F738732C

Q30463597-0E04C17A-61F2-4FF1-AB13-7F280F3C9314

Q30463597-0FFEE463-1765-4770-8ACC-54F8E7E6BF6F

Q30463597-1F4AEA15-1275-4DEB-BBAB-DB513371B51D

Q30463597-24DCA496-3A5E-4D74-973E-C0D319FE9ED4

Q30463597-292185FC-6E76-4F20-A339-632D10B4E610

Q30463597-2F4B014D-F4D6-4859-8C41-68466B1AA797

Q30463597-2FD54C2D-7F25-42C7-B8DB-C28127EC3C16

Q30463597-302AB9CB-8596-43DA-86B7-4A23D6EA6C3C

P2888

Q30463597-B132C269-ADE2-4192-A833-977468F6F13A

P304

Q30463597-DDDF69F1-8E31-4E9E-BF86-B148FF5F0B28

P31

Q30463597-B1B8CA71-F7C3-46A0-8DEA-4EEB72DC53F1

P356

Q30463597-9091308C-530C-4B2A-8211-24E77FB1152B

P433

Q30463597-2E023485-317F-4D61-8E17-667C5BECE0EB

P478

Q30463597-001EA1F3-A334-4F33-9FCC-929A840B9AD7

P50

Q30463597-2E7E1506-A813-44BB-B471-83432A8F0A90

Q30463597-42A76296-A7E1-4E69-8EB7-4E3E558FDBFE

Q30463597-43E04179-378E-40C7-AF36-5D053750AFD2

Q30463597-6E94022B-18B7-4808-91FA-D5167125EEA8

Q30463597-F5DE0B26-9843-458E-A6A4-05EDEDE366AC

P577

Q30463597-94A3CB52-FAFC-4227-8F4C-09BA09473435

P5875

Q30463597-80210EF0-9D28-438A-B40E-D013A955998B

P6179

Q30463597-7E10B48A-817E-4C58-BDC9-50A560A37D2A

P698

Q30463597-C6CF3364-CC99-40EC-8C01-225CC37E3002

P921

Q30463597-644478EF-1ABF-47F6-A464-9E4B7276040D

Q30463597-CA96E319-B95C-4E91-BD3E-7EBE306E2975

P932

Q30463597-D2EEDC84-8C37-444A-929F-D318E79DB3D7

P356

GB-2012-13-3-R23

P1433

P1476

Efficient and robust RNA-seq p ...... mplex community transcriptomes

@en

P2093

Brian J Haas

http://www.w3.org/2001/XMLSchema#string

Bruce W Birren

http://www.w3.org/2001/XMLSchema#string

Dawn M Ciulla

http://www.w3.org/2001/XMLSchema#string

Doyle V Ward

http://www.w3.org/2001/XMLSchema#string

Jacques Izard

http://www.w3.org/2001/XMLSchema#string

Jonathan Livny

http://www.w3.org/2001/XMLSchema#string

Joshua Z Levin

http://www.w3.org/2001/XMLSchema#string

Katherine Huang

http://www.w3.org/2001/XMLSchema#string

P2860

The RIN: an RNA integrity number for assigning integrity values to RNA measurements

Mapping and quantifying mammalian transcriptomes by RNA-Seq

A human gut microbial gene catalogue established by metagenomic sequencing

Transcriptome analysis of Pseudomonas syringae identifies new genes, noncoding RNAs, and antisense activity

Accurate whole human genome sequencing using reversible terminator chemistry

A core gut microbiome in obese and lean twins

Microbial community gene expression in ocean surface waters

RNAmmer: consistent and rapid annotation of ribosomal RNA genes

The primary transcriptome of the major human pathogen Helicobacter pylori

Molecular mechanisms of ethanol-induced pathogenesis revealed by RNA-sequencing

P2888

gb-2012-13-3-r23

P304

R23

http://www.w3.org/2001/XMLSchema#string

P31

scholarly article

P356

10.1186/GB-2012-13-3-R23

http://www.w3.org/2001/XMLSchema#string

P433

3

http://www.w3.org/2001/XMLSchema#string

P478

13

http://www.w3.org/2001/XMLSchema#string

P50

Georgia Giannoukos

P577

2012-01-01T00:00:00Z

http://www.w3.org/2001/XMLSchema#dateTime

P5875

223135733

http://www.w3.org/2001/XMLSchema#string

P6179

1036305770

http://www.w3.org/2001/XMLSchema#string

P698

22455878

http://www.w3.org/2001/XMLSchema#string

P921

P932

3439974

http://www.w3.org/2001/XMLSchema#string