about
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot projectGenome-wide association between branch point properties and alternative splicingEGASP: the human ENCODE Genome Annotation Assessment ProjectThe genome sequence of taurine cattle: a window to ruminant biology and evolutionGenome sequence of the Brown Norway rat yields insights into mammalian evolutionInitial sequencing and comparative analysis of the mouse genomeComparative gene finding in chicken indicates that we are closing in on the set of multi-exonic widely expressed human genesThe Ensembl genome database projectUse of ChIP-Seq data for the design of a multiple promoter-alignment methodEvaluation of the chicken transcriptome by SAGE of B cells and the DT40 cell lineIntegrative annotation of 21,037 human genes validated by full-length cDNA clonesGene finding in the chicken genomeHog1 bypasses stress-mediated down-regulation of transcription by RNA polymerase II redistribution and chromatin remodelingThe BioMart community portal: an innovative alternative to large, centralized data repositoriesLarge-scale analysis of genome and transcriptome alterations in multiple tumors unveils novel cancer-relevant splicing networksThe Microprocessor controls the activity of mammalian retrotransposonsThe pivotal roles of TIA proteins in 5' splice-site selection of alu exons and across evolutionAn overview of EnsemblPredictive models of gene regulation from high-throughput epigenomics data.Methods to study splicing from high-throughput RNA sequencing data.A Quantitative Profiling Tool for Diverse Genomic Data Types Reveals Potential Associations between Chromatin and Pre-mRNA Processing.Differentiated evolutionary rates in alternative exons and the implications for splicing regulation.Pyicos: a versatile toolkit for the analysis of high-throughput sequencing dataArgonaute-1 binds transcriptional enhancers and controls constitutive and alternative splicing in human cells.ASTD: The Alternative Splicing and Transcript Diversity database.Direct cloning of double-stranded RNAs from RNase protection analysis reveals processing patterns of C/D box snoRNAs and provides evidence for widespread antisense transcript expressionA chromatin code for alternative splicing involving a putative association between CTCF and HP1α proteinsA semi-supervised approach uncovers thousands of intragenic enhancers differentially activated in human cells.Leveraging transcript quantification for fast computation of alternative splicing profiles.RNA secondary structure mediates alternative 3'ss selection in Saccharomyces cerevisiaeIslands of euchromatin-like sequence and expressed polymorphic sequences within the short arm of human chromosome 21DGCR8 HITS-CLIP reveals novel functions for the Microprocessor.Large-scale comparative analysis of splicing signals and their corresponding splicing factors in eukaryotes.Databases and resources for human small non-coding RNAsESTGenes: alternative splicing from ESTs in Ensembl.Dual function of C/D box small nucleolar RNAs in rRNA modification and alternative pre-mRNA splicing.Exon creation and establishment in human genesThe prognostic potential of alternative transcript isoforms across human tumors.The RNA-binding landscape of RBM10 and its role in alternative splicing regulation in models of mouse early development.AtRTD - a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana.
P50
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P50
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