SOAPfuse: an algorithm for identifying fusion transcripts from paired-end RNA-Seq data. - Test2 - elhamkhani - TriplyDB

SOAPfuse: an algorithm for identifying fusion transcripts from paired-end RNA-Seq data.

SOAPfuse: an algorithm for identifying fusion transcripts from paired-end RNA-Seq data.

http://www.wikidata.org/entity/Q30588697

about

Identifying fusion transcripts using next generation sequencing Practical aspects of NGS-based pathways analysis for personalized cancer science and medicine Integrated genomic analyses identify frequent gene fusion events and VHL inactivation in gastrointestinal stromal tumors Chimeric RNAs in cancer and normal physiology.Fusion transcriptome profiling provides insights into alveolar rhabdomyosarcoma.Comparative assessment of methods for the fusion transcripts detection from RNA-Seq data Recurrent chimeric fusion RNAs in non-cancer tissues and cells.Discovery of CTCF-sensitive Cis-spliced fusion RNAs between adjacent genes in human prostate cells.Identification of novel fusion genes in lung cancer using breakpoint assembly of transcriptome sequencing data.FusionCancer: a database of cancer fusion genes derived from RNA-seq data.Comprehensive evaluation of fusion transcript detection algorithms and a meta-caller to combine top performing methods in paired-end RNA-seq data.SimFuse: A Novel Fusion Simulator for RNA Sequencing (RNA-Seq) Data Discovering and understanding oncogenic gene fusions through data intensive computational approaches ChimerDB 3.0: an enhanced database for fusion genes from cancer transcriptome and literature data mining InFusion: Advancing Discovery of Fusion Genes and Chimeric Transcripts from Deep RNA-Sequencing Data.ChimPipe: accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data.JAFFA: High sensitivity transcriptome-focused fusion gene detection.An Efficient Method for Identifying Gene Fusions by Targeted RNA Sequencing from Fresh Frozen and FFPE Samples.An improved understanding of cancer genomics through massively parallel sequencing.CANEapp: a user-friendly application for automated next generation transcriptomic data analysis Transcriptome analysis of paired primary colorectal carcinoma and liver metastases reveals fusion transcripts and similar gene expression profiles in primary carcinoma and liver metastases.Characterization of fusion genes and the significantly expressed fusion isoforms in breast cancer by hybrid sequencing.ChimeRScope: a novel alignment-free algorithm for fusion transcript prediction using paired-end RNA-Seq data.Frequent alterations in cytoskeleton remodelling genes in primary and metastatic lung adenocarcinomas.Identification of Novel Fusion Genes in Testicular Germ Cell Tumors.NCLscan: accurate identification of non-co-linear transcripts (fusion, trans-splicing and circular RNA) with a good balance between sensitivity and precision Recurrent and pathological gene fusions in breast cancer: current advances in genomic discovery and clinical implications.Integrative transcriptome sequencing identifies trans-splicing events with important roles in human embryonic stem cell pluripotency.Implementing personalized cancer genomics in clinical trials.Introduction to RNA-Seq and its applications to drug discovery and development.Detecting and targetting oncogenic fusion proteins in the genomic era.GFusion: an Effective Algorithm to Identify Fusion Genes from Cancer RNA-Seq Data.Gaining comprehensive biological insight into the transcriptome by performing a broad-spectrum RNA-seq analysis.Statistical algorithms improve accuracy of gene fusion detection.Recurrent MET fusion genes represent a drug target in pediatric glioblastoma.chimeraviz: A tool for visualizing chimeric RNA.Characterization of fusion genes in common and rare epithelial ovarian cancer histologic subtypes RNA sequencing of sarcomas with simple karyotypes: identification and enrichment of fusion transcripts.Intra-tumour molecular heterogeneity of clear cell renal cell carcinoma reveals the diversity of the response to targeted therapies using patient-derived xenograft models.Novel chimeric transcript RRM2-c2orf48 promotes metastasis in nasopharyngeal carcinoma.

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SOAPfuse: an algorithm for identifying fusion transcripts from paired-end RNA-Seq data.

http://www.wikidata.org/entity/Q30588697

description

2013 nî lūn-bûn

@nan

2013 թուականի Փետրուարին հրատարակուած գիտական յօդուած

@hyw

2013 թվականի փետրվարին հրատարակված գիտական հոդված

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2013年の論文

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2013年論文

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2013年論文

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2013年論文

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2013年論文

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2013年論文

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2013年论文

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name

SOAPfuse: an algorithm for identifying fusion transcripts from paired-end RNA-Seq data.

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SOAPfuse: an algorithm for identifying fusion transcripts from paired-end RNA-Seq data.

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SOAPfuse: an algorithm for identifying fusion transcripts from paired-end RNA-Seq data.

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SOAPfuse: an algorithm for identifying fusion transcripts from paired-end RNA-Seq data.

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SOAPfuse: an algorithm for identifying fusion transcripts from paired-end RNA-Seq data.

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SOAPfuse: an algorithm for identifying fusion transcripts from paired-end RNA-Seq data.

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Feng Zhou

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Michael L Nickerson

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Minghui He

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Pengfei Song

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P2860

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Differential DNA methylation in discrete developmental stages of the parasitic nematode Trichinella spiralis

Mapping and quantifying mammalian transcriptomes by RNA-Seq

Integrative analysis of the melanoma transcriptome

The transcriptional landscape of the yeast genome defined by RNA sequencing

Mapping short DNA sequencing reads and calling variants using mapping quality scores

Transcriptome sequencing to detect gene fusions in cancer

Fast and accurate short read alignment with Burrows-Wheeler transform

FusionSeq: a modular framework for finding gene fusions by analyzing Paired-End RNA-Sequencing data

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