Evaluation and optimization of mass spectrometric settings during data-dependent acquisition mode: focus on LTQ-Orbitrap mass analyzers - Test2 - elhamkhani - TriplyDB

Evaluation and optimization of mass spectrometric settings during data-dependent acquisition mode: focus on LTQ-Orbitrap mass analyzers

Evaluation and optimization of mass spectrometric settings during data-dependent acquisition mode: focus on LTQ-Orbitrap mass analyzers

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The Role of Proteomics in Biomarker Development for Improved Patient Diagnosis and Clinical Decision Making in Prostate Cancer Phosphoproteome and Transcriptome of RA-Responsive and RA-Resistant Breast Cancer Cell Lines Global proteomic analysis of prenylated proteins in Plasmodium falciparum using an alkyne-modified isoprenoid analogue Bioinformatic analysis of proteomics data.Degradation of the deubiquitinating enzyme USP33 is mediated by p97 and the ubiquitin ligase HERC2.In situ visualization of newly synthesized proteins in environmental microbes using amino acid tagging and click chemistry.Rapid identif ication and comparative analysis of chemical constituents in herbal medicine Fufang decoction by ultra-high-pressure liquid chromatography coupled with a hybrid linear ion trap-high-resolution mass spectrometry.An integrated strategy for the systematic characterization and discovery of new indole alkaloids from Uncaria rhynchophylla by UHPLC/DAD/LTQ-Orbitrap-MS.The diverse chemistry of cytochrome P450 17A1 (P450c17, CYP17A1).JNK-associated Leucine Zipper Protein Functions as a Docking Platform for Polo-like Kinase 1 and Regulation of the Associating Transcription Factor Forkhead Box Protein K1.The Mediator Subunit MED16 Transduces NRF2-Activating Signals into Antioxidant Gene Expression.Phosphoproteome Discovery in Human Biological Fluids.Phosphoproteomics Analysis for Probing Plant Stress Tolerance.Pharmacokinetic variations in cancer patients with liver dysfunction: applications and challenges of pharmacometabolomics.Improved bottom-up strategy to efficiently separate hypermodified histone peptides through ultra-HPLC separation on a bench top Orbitrap instrument.Strategies for large-scale targeted metabolomics quantification by liquid chromatography-mass spectrometry.Shotgun Proteomics of Tomato Fruits: Evaluation, Optimization and Validation of Sample Preparation Methods and Mass Spectrometric Parameters.Improved Quantitative Plant Proteomics via the Combination of Targeted and Untargeted Data Acquisition ETD Outperforms CID and HCD in the Analysis of the Ubiquitylated Proteome High-resolution enabled 12-plex DiLeu isobaric tags for quantitative proteomics.Foodomics and Food Safety: Where We Are.Quality control in mass spectrometry-based proteomics.Bioorthogonal Noncanonical Amino Acid Tagging (BONCAT) Enables Time-Resolved Analysis of Protein Synthesis in Native Plant Tissue.Maillard Proteomics: Opening New Pages.Definitive screening design enables optimization of LC-ESI-MS/MS parameters in proteomics.Proteomic profiling of antibody-inducing immunogens in tumor tissue identifies PSMA1, LAP3, ANXA3, and maspin as colon cancer markers.Analysis of isoquinoline alkaloids from Mahonia leschenaultia and Mahonia napaulensis roots using UHPLC-Orbitrap-MSn and UHPLC-QqQLIT-MS/MS.Characterization of a high field Orbitrap mass spectrometer for proteome analysis.Mass Spectrometry-Based Biomarker Discovery.Glucocorticoid receptor signaling represses the antioxidant response by inhibiting histone acetylation mediated by the transcriptional activator NRF2.A Multi-Omics Analysis Pipeline for the Metabolic Pathway Reconstruction in the Orphan Species A new strategy for MS/MS data acquisition applying multiple data dependent experiments on Orbitrap mass spectrometers in non-targeted metabolomic applications O-GlcNAcylation Signal Mediates Proteasome Inhibitor Resistance in Cancer Cells by Stabilizing NRF1

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Evaluation and optimization of mass spectrometric settings during data-dependent acquisition mode: focus on LTQ-Orbitrap mass analyzers

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Anastasia Kalli

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Geoffrey T Smith

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Michael J Sweredoski

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Sonja Hess

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P2860

Identification of 491 proteins in the tear fluid proteome reveals a large number of proteases and protease inhibitors

Enrichment techniques employed in phosphoproteomics

Global analysis of protein expression in yeast

Probability-based protein identification by searching sequence databases using mass spectrometry data

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

Identification and characterization of apelin peptides in bovine colostrum and milk by liquid chromatography-mass spectrometry

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