Characterizing and measuring bias in sequence data. - Test2 - elhamkhani - TriplyDB

Characterizing and measuring bias in sequence data.

Characterizing and measuring bias in sequence data.

http://www.wikidata.org/entity/Q30635784

about

GROM-RD: resolving genomic biases to improve read depth detection of copy number variants Sequencing and assembly of the 22-gb loblolly pine genome A Benchmark Study on Error Assessment and Quality Control of CCS Reads Derived from the PacBio RS Molecular classification based on apomorphic amino acids (Arthropoda, Hexapoda): Integrative taxonomy in the era of phylogenomics Understanding the Basics of NGS: From Mechanism to Variant Calling Genetic variation and the de novo assembly of human genomes Best practices for evaluating single nucleotide variant calling methods for microbial genomics Rare-variant association analysis: study designs and statistical tests Computational methods for detecting copy number variations in cancer genome using next generation sequencing: principles and challenges A bumpy ride on the diagnostic bench of massive parallel sequencing, the case of the mitochondrial genome Metagenomic survey for viruses in Western Arctic caribou, Alaska, through iterative assembly of taxonomic units Major Improvements to the Heliconius melpomene Genome Assembly Used to Confirm 10 Chromosome Fusion Events in 6 Million Years of Butterfly Evolution.Integrating next-generation sequencing into clinical oncology: strategies, promises and pitfalls High-Throughput Sequencing-Based Immune Repertoire Study during Infectious Disease Next-generation sequencing: advances and applications in cancer diagnosis Molecular diagnosis of putative Stargardt disease by capture next generation sequencing A Rewritable, Random-Access DNA-Based Storage System Intrinsic challenges in ancient microbiome reconstruction using 16S rRNA gene amplification High-throughput sequencing technologies An Epigenetics-Inspired DNA-Based Data Storage System DNA Fountain enables a robust and efficient storage architecture Detecting and correcting the binding-affinity bias in ChIP-seq data using inter-species information.Amino acid changes in disease-associated variants differ radically from variants observed in the 1000 genomes project dataset.Toward reliable biomarker signatures in the age of liquid biopsies - how to standardize the small RNA-Seq workflow Illumina MiSeq sequencing disfavours a sequence motif in the GFP reporter gene.Investigation into the annotation of protocol sequencing steps in the sequence read archive.Pan-Tetris: an interactive visualisation for Pan-genomes.Simulating a population genomics data set using FlowSim.Shotgun metagenomic data reveals significant abundance but low diversity of "Candidatus Scalindua" marine anammox bacteria in the Arabian Sea oxygen minimum zone.Evaluation of PacBio sequencing for full-length bacterial 16S rRNA gene classification.Validation of multiple single nucleotide variation calls by additional exome analysis with a semiconductor sequencer to supplement data of whole-genome sequencing of a human population.Gorilla MHC class I gene and sequence variation in a comparative context Estimating genotype error rates from high-coverage next-generation sequence data.Reducing INDEL calling errors in whole genome and exome sequencing data.16S rRNA gene high-throughput sequencing data mining of microbial diversity and interactions.Sources of PCR-induced distortions in high-throughput sequencing data sets AMPLISAS: a web server for multilocus genotyping using next-generation amplicon sequencing data.Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data.Replicate exome-sequencing in a multiple-generation family: improved interpretation of next-generation sequencing data.Choice of reference-guided sequence assembler and SNP caller for analysis of Listeria monocytogenes short-read sequence data greatly influences rates of error.

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Characterizing and measuring bias in sequence data.

http://www.wikidata.org/entity/Q30635784

description

2013 nî lūn-bûn

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2013 թուականի Մայիսին հրատարակուած գիտական յօդուած

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2013 թվականի մայիսին հրատարակված գիտական հոդված

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2013年の論文

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2013年論文

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2013年論文

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2013年論文

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2013年論文

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2013年論文

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2013年论文

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Characterizing and measuring bias in sequence data.

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Characterizing and measuring bias in sequence data.

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Characterizing and measuring bias in sequence data.

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Characterizing and measuring bias in sequence data.

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Characterizing and measuring bias in sequence data.

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Characterizing and measuring bias in sequence data.

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Andrew Hollinger

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David B Jaffe

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Michael G Ross

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Niall J Lennon

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Ryan Hegarty

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P2860

A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers.

Comparison of next-generation sequencing systems

DNA sequencing with chain-terminating inhibitors

Genome sequencing in microfabricated high-density picolitre reactors

PCR fidelity of pfu DNA polymerase and other thermostable DNA polymerases

A vast collection of microbial genes that are toxic to bacteria

A map of human genome variation from population-scale sequencing

Accurate whole human genome sequencing using reversible terminator chemistry

Fast and accurate short read alignment with Burrows-Wheeler transform

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

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