Rice transposable elements: a survey of 73,000 sequence-tagged-connectors - Test2 - elhamkhani - TriplyDB

Rice transposable elements: a survey of 73,000 sequence-tagged-connectors

Rice transposable elements: a survey of 73,000 sequence-tagged-connectors

http://www.wikidata.org/entity/Q30651527

about

A family of human microRNA genes from miniature inverted-repeat transposable elements Horizontal transfer of a plant transposon The Genomes of Oryza sativa: a history of duplications Validation of rice genome sequence by optical mapping.Miniature inverted-repeat transposable elements (MITEs) have been accumulated through amplification bursts and play important roles in gene expression and species diversity in Oryza sativa Rim 2/Hipa CACTA transposon display: a new genetic marker technique in Oryza species Long terminal repeat retrotransposons of Oryza sativa.Evolutionary history of Oryza sativa LTR retrotransposons: a preliminary survey of the rice genome sequences A clustering method for repeat analysis in DNA sequences Reconstruction of putative DNA virus from endogenous rice tungro bacilliform virus-like sequences in the rice genome: implications for integration and evolution Advances in BAC-based physical mapping and map integration strategies in plants Moving through the Stressed Genome: Emerging Regulatory Roles for Transposons in Plant Stress Response Plant MITEs: useful tools for plant genetics and genomics Dual coding of siRNAs and miRNAs by plant transposable elements Genome-wide analysis of mariner-like transposable elements in rice reveals complex relationships with stowaway miniature inverted repeat transposable elements (MITEs)The map-based sequence of the rice genome RePS: a sequence assembler that masks exact repeats identified from the shotgun data.Internet Contig Explorer (iCE)--a tool for visualizing clone fingerprint maps.Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome Construction and characterization of two BAC libraries from Brachypodium distachyon, a new model for grass genomics.Rice genome organization: the centromere and genome interactions An integrated physical and genetic map of the rice genome.Transposable element distribution, abundance and role in genome size variation in the genus Oryza.Rice transposable elements are characterized by various methylation environments in the genome The protist Trichomonas vaginalis harbors multiple lineages of transcriptionally active Mutator-like elements Mutator-like element in the yeast Yarrowia lipolytica displays multiple alternative splicings.Physical mapping and BAC-end sequence analysis provide initial insights into the flax (Linum usitatissimum L.) genome.Domestication of transposable elements into MicroRNA genes in plants P instability factor: an active maize transposon system associated with the amplification of Tourist-like MITEs and a new superfamily of transposases.Inference of subgenomic origin of BACs in an interspecific hybrid sugarcane cultivar by overlapping oligonucleotide hybridizations.Phantom, a new subclass of Mutator DNA transposons found in insect viruses and widely distributed in animals.The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza Distribution of genes and repetitive elements in the Diabrotica virgifera virgifera genome estimated using BAC sequencing.Dasheng: a recently amplified nonautonomous long terminal repeat element that is a major component of pericentromeric regions in rice BAC-end sequences analysis provides first insights into coffee (Coffea canephora P.) genome composition and evolution.Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential.Abundant degenerate miniature inverted-repeat transposable elements in genomes of epichloid fungal endophytes of grasses Transposition of a fungal miniature inverted-repeat transposable element through the action of a Tc1-like transposase.A genome-wide transcriptional activity survey of rice transposable element-related genes.A fine physical map of the rice chromosome 4.

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P2860

Rice transposable elements: a survey of 73,000 sequence-tagged-connectors

http://www.wikidata.org/entity/Q30651527

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2000 nî lūn-bûn

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2000 թուականի Յուլիսին հրատարակուած գիտական յօդուած

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2000 թվականի հուլիսին հրատարակված գիտական հոդված

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2000年の論文

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2000年論文

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2000年論文

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2000年論文

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2000年論文

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2000年論文

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2000年论文

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Rice transposable elements: a survey of 73,000 sequence-tagged-connectors

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Rice transposable elements: a survey of 73,000 sequence-tagged-connectors

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Rice transposable elements: a survey of 73,000 sequence-tagged-connectors

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Rice transposable elements: a survey of 73,000 sequence-tagged-connectors

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Rice transposable elements: a survey of 73,000 sequence-tagged-connectors

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Rice transposable elements: a survey of 73,000 sequence-tagged-connectors

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Genome Research

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Rice transposable elements: a survey of 73,000 sequence-tagged-connectors

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Budiman MA

http://www.w3.org/2001/XMLSchema#string

Dean RA

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Frisch D

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Goff S

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Mao L

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Presting G

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Wood TC

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

Improved tools for biological sequence comparison.

Base-calling of automated sequencer traces using phred. II. Error probabilities

Construction of phylogenetic trees

Origin and evolution of retroelements based upon their reverse transcriptase sequences

Identifying distantly related protein sequences.

Comparison of DNA sequences with protein sequences.

High throughput direct end sequencing of BAC clones

Analysis of sequence-tagged-connector strategies for DNA sequencing

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982-990

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10.1101/GR.10.7.982

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7

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10

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10899147

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310901

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