High-resolution definition of the Vibrio cholerae essential gene set with hidden Markov model-based analyses of transposon-insertion sequencing data - Test2 - elhamkhani - TriplyDB

High-resolution definition of the Vibrio cholerae essential gene set with hidden Markov model-based analyses of transposon-insertion sequencing data

High-resolution definition of the Vibrio cholerae essential gene set with hidden Markov model-based analyses of transposon-insertion sequencing data

http://www.wikidata.org/entity/Q30658302

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Genomic location of the major ribosomal protein gene locus determines Vibrio cholerae global growth and infectivity ARTIST: high-resolution genome-wide assessment of fitness using transposon-insertion sequencing Statistical Analysis of Hurst Exponents of Essential/Nonessential Genes in 33 Bacterial Genomes PIMMS (Pragmatic Insertional Mutation Mapping System) Laboratory Methodology a Readily Accessible Tool for Identification of Essential Genes in Streptococcus A Genome-Wide Screen Reveals that the Vibrio cholerae Phosphoenolpyruvate Phosphotransferase System Modulates Virulence Gene Expression A Cytosine Methyltransferase Modulates the Cell Envelope Stress Response in the Cholera Pathogen [corrected].Essential genome of Pseudomonas aeruginosa in cystic fibrosis sputum.A zero-inflated Poisson model for insertion tolerance analysis of genes based on Tn-seq data.Combining Shigella Tn-seq data with gold-standard E. coli gene deletion data suggests rare transitions between essential and non-essential gene functionality.The highly conserved bacterial RNase YbeY is essential in Vibrio cholerae, playing a critical role in virulence, stress regulation, and RNA processing Transposon insertion sequencing reveals T4SS as the major genetic trait for conjugation transfer of multi-drug resistance pEIB202 from Edwardsiella Disruption of Mycobacterium avium subsp. paratuberculosis-specific genes impairs in vivo fitness Statistical analysis of genetic interactions in Tn-Seq data.Essential Genes in the Core Genome of the Human Pathogen Streptococcus pyogenes.Comprehensive Essentiality Analysis of the Mycobacterium tuberculosis Genome via Saturating Transposon Mutagenesis.Genome-wide mutant fitness profiling identifies nutritional requirements for optimal growth of Yersinia pestis in deep tissue.The essential gene set of a photosynthetic organism.Cell separation in Vibrio cholerae is mediated by a single amidase whose action is modulated by two nonredundant activators High-resolution genetic analysis of the requirements for horizontal transmission of the ESBL plasmid from Escherichia coli O104:H4.Gene fitness landscapes of Vibrio cholerae at important stages of its life cycle Genome-scale metabolic network validation of Shewanella oneidensis using transposon insertion frequency analysis A new platform for ultra-high density Staphylococcus aureus transposon libraries Construction of a mariner-based transposon vector for use in insertion sequence mutagenesis in selected members of the Rhizobiaceae.The design and analysis of transposon insertion sequencing experiments.Multidrug Intrinsic Resistance Factors in Staphylococcus aureus Identified by Profiling Fitness within High-Diversity Transposon Libraries.The Nucleoid Binding Protein H-NS Biases Genome-Wide Transposon Insertion Landscapes.Regional Control of Chromosome Segregation in Pseudomonas aeruginosa.Peptidoglycan synthesis in Mycobacterium tuberculosis is organized into networks with varying drug susceptibility.A D, D-carboxypeptidase is required for Vibrio cholerae halotolerance.MAGenTA; a Galaxy implemented tool for complete Tn-Seq analysis and data visualization.Genetic analysis of Vibrio parahaemolyticus intestinal colonization Essentiality of threonylcarbamoyladenosine (t(6)A), a universal tRNA modification, in bacteria.Infant Rabbit Model for Diarrheal Diseases.Composition of the DNA-uptake complex of Vibrio cholerae.Tn-Seq analysis of Vibrio cholerae intestinal colonization reveals a role for T6SS-mediated antibacterial activity in the host The Proximity of Ribosomal Protein Genes to oriC Enhances Vibrio cholerae Fitness in the Absence of Multifork Replication.Proteomic analysis of Vibrio cholerae outer membrane vesicles.Differential requirement for PBP1a and PBP1b in in vivo and in vitro fitness of Vibrio cholerae Identification of in vivo regulators of the Vibrio cholerae xds gene using a high-throughput genetic selection.DNA methyltransferases and epigenetic regulation in bacteria.

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High-resolution definition of the Vibrio cholerae essential gene set with hidden Markov model-based analyses of transposon-insertion sequencing data

http://www.wikidata.org/entity/Q30658302

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2013 nî lūn-bûn

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2013 թուականի Յուլիսին հրատարակուած գիտական յօդուած

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2013 թվականի հուլիսին հրատարակված գիտական հոդված

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2013年の論文

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2013年論文

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High-resolution definition of ...... oson-insertion sequencing data

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Brigid M Davis

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Jonathan Livny

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Justin R Pritchard

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Matthew K Waldor

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Yanjia J Zhang

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P2860

Control of virulence by small RNAs in Streptococcus pneumoniae

DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae

sRNAPredict: an integrative computational approach to identify sRNAs in bacterial genomes.

Regulation of riboflavin biosynthesis and transport genes in bacteria by transcriptional and translational attenuation

Fast gapped-read alignment with Bowtie 2

Translational repression of the Escherichia coli alpha operon mRNA: importance of an mRNA conformational switch and a ternary entrapment complex

The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme

The new gene mukB codes for a 177 kd protein with coiled-coil domains involved in chromosome partitioning of E. coli

Rfam 11.0: 10 years of RNA families

Global assessment of genomic regions required for growth in Mycobacterium tuberculosis

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10.1093/NAR/GKT654

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19

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23901011

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Vibrio cholerae

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3799429

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