Evaluation of de novo transcriptome assemblies from RNA-Seq data. - Test2 - elhamkhani - TriplyDB

Evaluation of de novo transcriptome assemblies from RNA-Seq data.

Evaluation of de novo transcriptome assemblies from RNA-Seq data.

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Comparative performance of transcriptome assembly methods for non-model organisms Assembly, Assessment, and Availability of De novo Generated Eukaryotic Transcriptomes Analysis of amino acid and codon usage in Paramecium bursaria Proteinaceous Pheromone Homologs Identified from the Cloacal Gland Transcriptome of a Male Axolotl, Ambystoma mexicanum Identification of Putative Olfactory Genes from the Oriental Fruit Moth Grapholita molesta via an Antennal Transcriptome Analysis De novo sequencing, assembly and analysis of eight different transcriptomes from the Malayan pangolin Neural transcriptome reveals molecular mechanisms for temporal control of vocalization across multiple timescales Head Transcriptomes of Two Closely Related Species of Fruit Flies of the Anastrepha fraterculus Group Reveals Divergent Genes in Species with Extensive Gene Flow.Gene expression underlying enhanced, steroid-dependent auditory sensitivity of hair cell epithelium in a vocal fish.Informatics for RNA Sequencing: A Web Resource for Analysis on the Cloud.Evolution of Chemosensory Gene Families in Arthropods: Insight from the First Inclusive Comparative Transcriptome Analysis across Spider Appendages Ameliorated de novo transcriptome assembly using Illumina paired end sequence data with Trinity Assembler Transcriptome analysis reveals differentially expressed genes associated with germ cell and gonad development in the Southern bluefin tuna (Thunnus maccoyii).A comparison of tools for the simulation of genomic next-generation sequencing data.De novo transcriptome assembly facilitates characterisation of fast-evolving gene families, MHC class I in the bank vole (Myodes glareolus).A Tissue-Mapped Axolotl De Novo Transcriptome Enables Identification of Limb Regeneration Factors A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing.Transcriptomics technologies.TransRate: reference-free quality assessment of de novo transcriptome assemblies.Comparison of assembly algorithms for improving rate of metatranscriptomic functional annotation Molecular Diversity and Gene Evolution of the Venom Arsenal of Terebridae Predatory Marine Snails.Getting the most out of RNA-seq data analysis.Single-molecule real-time transcript sequencing facilitates common wheat genome annotation and grain transcriptome research Mechanotransduction Mechanisms for Intraventricular Diastolic Vortex Forces and Myocardial Deformations: Part 2.De novo assembly and transcriptome analysis of Plasmodium gallinaceum identifies the Rh5 interacting protein (ripr), and reveals a lack of EBL and RH gene family diversification.Comparison of De Novo Transcriptome Assemblers and k-mer Strategies Using the Killifish, Fundulus heteroclitus.rnaQUAST: a quality assessment tool for de novo transcriptome assemblies.Analysis of ethanol fermentation mechanism of ethanol producing white-rot fungus Phlebia sp. MG-60 by RNA-seq.Traditional versus 3' RNA-seq in a non-model species.Combining independent de novo assemblies optimizes the coding transcriptome for nonconventional model eukaryotic organisms.De novo transcriptome assembly of heavy metal tolerant Silene dioica.Large-scale transcriptome sequencing reveals novel expression patterns for key sex-related genes in a sex-changing fish.Informed kmer selection for de novo transcriptome assembly The Evolution of the FT/TFL1 Genes in Amaranthaceae and Their Expression Patterns in the Course of Vegetative Growth and Flowering in Chenopodium rubrum.NRL-Regulated Transcriptome Dynamics of Developing Rod Photoreceptors.Compacting and correcting Trinity and Oases RNA-Seq de novo assemblies.Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads.AtRTD - a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana.Detailed tail proteomic analysis of axolotl (Ambystoma mexicanum) using an mRNA-seq reference database.Caste-biases in gene expression are specific to developmental stage in the ant Formica exsecta.

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Evaluation of de novo transcriptome assemblies from RNA-Seq data.

http://www.wikidata.org/entity/Q30885438

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2014 nî lūn-bûn

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2014 թուականի Դեկտեմբերին հրատարակուած գիտական յօդուած

@hyw

2014 թվականի դեկտեմբերին հրատարակված գիտական հոդված

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2014年の論文

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2014年論文

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2014年論文

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2014年論文

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2014年論文

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2014年論文

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2014年论文

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name

Evaluation of de novo transcriptome assemblies from RNA-Seq data.

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Evaluation of de novo transcriptome assemblies from RNA-Seq data.

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Evaluation of de novo transcriptome assemblies from RNA-Seq data.

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Evaluation of de novo transcriptome assemblies from RNA-Seq data.

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Evaluation of de novo transcriptome assemblies from RNA-Seq data.

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Evaluation of de novo transcriptome assemblies from RNA-Seq data.

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Evaluation of de novo transcriptome assemblies from RNA-Seq data.

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Bo Li

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Colin N Dewey

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James A Thomson

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Mike Collins

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Yongsheng Bai

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Comparing de novo assemblers for 454 transcriptome data

A practical comparison of de novo genome assembly software tools for next-generation sequencing technologies

Genome sequencing in microfabricated high-density picolitre reactors

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

Optimization of de novo transcriptome assembly from next-generation sequencing data

Full-length transcriptome assembly from RNA-Seq data without a reference genome

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

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