Full-length de novo assembly of RNA-seq data in pea (Pisum sativum L.) provides a gene expression atlas and gives insights into root nodulation in this species. - Test2 - elhamkhani - TriplyDB

Full-length de novo assembly of RNA-seq data in pea (Pisum sativum L.) provides a gene expression atlas and gives insights into root nodulation in this species.

Full-length de novo assembly of RNA-seq data in pea (Pisum sativum L.) provides a gene expression atlas and gives insights into root nodulation in this species.

http://www.wikidata.org/entity/Q30988819

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Genomic Tools in Pea Breeding Programs: Status and Perspectives Integration of quantitated expression estimates from polyA-selected and rRNA-depleted RNA-seq libraries Genetic Variation Controlling Wrinkled Seed Phenotypes in Pisum: How Lucky Was Mendel?De novo construction of a "Gene-space" for diploid plant genome rich in repetitive sequences by an iterative Process of Extraction and Assembly of NGS reads (iPEA protocol) with limited computing resources.Genome-wide association mapping of partial resistance to Aphanomyces euteiches in pea.The Vigna unguiculata Gene Expression Atlas (VuGEA) from de novo assembly and quantification of RNA-seq data provides insights into seed maturation mechanisms.Genome-wide association studies with proteomics data reveal genes important for synthesis, transport and packaging of globulins in legume seeds.Comparative Transcriptomic Analyses of Vegetable and Grain Pea (Pisum sativum L.) Seed Development.A Combined Comparative Transcriptomic, Metabolomic, and Anatomical Analyses of Two Key Domestication Traits: Pod Dehiscence and Seed Dormancy in Pea (Pisum sp.).WRKY domain-encoding genes of a crop legume chickpea (Cicer arietinum): comparative analysis with Medicago truncatula WRKY family and characterization of group-III gene(s).An histidine covalent receptor and butenolide complex mediates strigolactone perception.Bean pod mottle virus: a new powerful tool for functional genomics studies in Pisum sativum.Generation and Characterisation of a Reference Transcriptome for Lentil (Lens culinaris Medik.).RNA-Seq analysis of nodule development at five different developmental stages of soybean (Glycine max) inoculated with Bradyrhizobium japonicum strain 113-2.De novo sequencing and comparative analysis of leaf transcriptomes of diverse condensed tannin-containing lines of underutilized Psophocarpus tetragonolobus (L.) DC.Differentially expressed genes in mycorrhized and nodulated roots of common bean are associated with defense, cell wall architecture, N metabolism, and P metabolism.Patterns of Genetic Structure and Linkage Disequilibrium in a Large Collection of Pea Germplasm.Gene expression atlas of pigeonpea and its application to gain insights into genes associated with pollen fertility implicated in seed formation Phenotyping: Using Machine Learning for Improved Pairwise Genotype Classification Based on Root Traits The systemic nodule number regulation kinase SUNN in Medicago truncatula interacts with MtCLV2 and MtCRN.Virus-Induced Gene Silencing (VIGS) and Foreign Gene Expression in Pisum sativum L. Using the "One-Step" Bean pod mottle virus (BPMV) Viral Vector.Optimization of Agroinfiltration in Pisum sativum Provides a New Tool for Studying the Salivary Protein Functions in the Pea Aphid Complex.Morphotype of bacteroids in different legumes correlates with the number and type of symbiotic NCR peptides.The pea branching RMS2 gene encodes the PsAFB4/5 auxin receptor and is involved in an auxin-strigolactone regulation loop.Selection Signatures in the First Exon of Paralogous Receptor Kinase Genes from the Sym2 Region of the Pisum sativum L. Genome.Pea Marker Database (PMD) - A new online database combining known pea (Pisum sativum L.) gene-based markers.DELLA1-Mediated Gibberellin Signaling Regulates Cytokinin-Dependent Symbiotic Nodulation.Succinate Transport Is Not Essential for Symbiotic Nitrogen Fixation by Sinorhizobium meliloti or Rhizobium leguminosarum.Comparative Genome-Wide-Association Mapping Identifies Common Loci Controlling Root System Architecture and Resistance to Aphanomyces euteiches in Pea.Linking Auxin with Photosynthetic Rate via Leaf Venation.Auxin Biosynthesis: Are the Indole-3-Acetic Acid and Phenylacetic Acid Biosynthesis Pathways Mirror Images?EARLY FLOWERING3 Redundancy Fine-Tunes Photoperiod Sensitivity.Identification of LATE BLOOMER2 as a CYCLING DOF FACTOR Homolog Reveals Conserved and Divergent Features of the Flowering Response to Photoperiod in Pea.Receptor-Like Kinase LYK9 in Pisum sativum L. Is the CERK1-Like Receptor that Controls Both Plant Immunity and AM Symbiosis Development.Genome-Wide Identification and Classification of Soybean C2H2 Zinc Finger Proteins and Their Expression Analysis in Legume-Rhizobium Symbiosis.Reprogramming of DNA methylation is critical for nodule development in Medicago truncatula

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Full-length de novo assembly of RNA-seq data in pea (Pisum sativum L.) provides a gene expression atlas and gives insights into root nodulation in this species.

http://www.wikidata.org/entity/Q30988819

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2015 nî lūn-bûn

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2015 թուականի Օգոստոսին հրատարակուած գիտական յօդուած

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2015 թվականի օգոստոսին հրատարակված գիտական հոդված

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2015年の論文

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2015年論文

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2015年論文

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2015年論文

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2015年論文

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2015年論文

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2015年论文

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Full-length de novo assembly o ...... ot nodulation in this species.

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Full-length de novo assembly o ...... ot nodulation in this species.

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The Plant Journal

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Anne-Lise Brochot

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Anthony Klein

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Chantal Martin

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Corinne Cruaud

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Françoise Jacquin

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Grégoire Aubert

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Judith Burstin

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Karen Boucherot

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Patrick Wincker

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Sandra Moreau

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Differential expression analysis for sequence count data

Mapping and quantifying mammalian transcriptomes by RNA-Seq

Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers

Genome sequence of the palaeopolyploid soybean

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

RNA-Seq: a revolutionary tool for transcriptomics

Optimization of de novo transcriptome assembly from next-generation sequencing data

Full-length transcriptome assembly from RNA-Seq data without a reference genome

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

CR-EST: a resource for crop ESTs

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1-19

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scholarly article

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10.1111/TPJ.12967

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1

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84

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Corinne Da Silva

Sébastien Carrere

Jonathan Kreplak

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2015-08-22T00:00:00Z

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281166795

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26296678

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