KaPPA-view: a web-based analysis tool for integration of transcript and metabolite data on plant metabolic pathway maps. - Test2 - elhamkhani - TriplyDB

KaPPA-view: a web-based analysis tool for integration of transcript and metabolite data on plant metabolic pathway maps.

KaPPA-view: a web-based analysis tool for integration of transcript and metabolite data on plant metabolic pathway maps.

http://www.wikidata.org/entity/Q30993886

about

KaPPA-View4: a metabolic pathway database for representation and analysis of correlation networks of gene co-expression and metabolite co-accumulation and omics data Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future Consolidating metabolite identifiers to enable contextual and multi-platform metabolomics data analysis Central Metabolic Responses to Ozone and Herbivory Affect Photosynthesis and Stomatal Closure Visualizing post genomics data-sets on customized pathway maps by ProMeTra-aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example 3Omics: a web-based systems biology tool for analysis, integration and visualization of human transcriptomic, proteomic and metabolomic data.VANTED: a system for advanced data analysis and visualization in the context of biological networks PageMan: an interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments.Gene expression profiling in susceptible interaction of grapevine with its fungal pathogen Eutypa lata: extending MapMan ontology for grapevine.Paintomics: a web based tool for the joint visualization of transcriptomics and metabolomics data.Genomics and bioinformatics resources for crop improvement.Comparative transcriptome analysis of green/white variegated sectors in Arabidopsis yellow variegated2: responses to oxidative and other stresses in white sectors Web-based Arabidopsis functional and structural genomics resources.Recent advances of metabolomics in plant biotechnology.Omics-based identification of Arabidopsis Myb transcription factors regulating aliphatic glucosinolate biosynthesis.Adaptation of the MapMan ontology to biotic stress responses: application in solanaceous species.The plant organelles database (PODB): a collection of visualized plant organelles and protocols for plant organelle research.Extending MapMan Ontology to Tobacco for Visualization of Gene Expression.Approaches for extracting practical information from gene co-expression networks in plant biology.Recent progress in the development of metabolome databases for plant systems biology.Integrated LC-MS/MS system for plant metabolomics.Recent progress in plant nutrition research: cross-talk between nutrients, plant physiology and soil microorganisms.Informatics for Metabolomics.Tools for the functional interpretation of metabolomic experiments.Metabolite annotations based on the integration of mass spectral information.Rank of correlation coefficient as a comparable measure for biological significance of gene coexpression.ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis.Quantitative transcriptomic analysis of abscisic acid-induced and reactive oxygen species-dependent expression changes and proteomic profiling in Arabidopsis suspension cells.Overexpression of genes encoding glycolytic enzymes in Corynebacterium glutamicum enhances glucose metabolism and alanine production under oxygen deprivation conditions.Precise sequential DNA ligation on a solid substrate: solid-based rapid sequential ligation of multiple DNA molecules Genes of primary sulfate assimilation are part of the glucosinolate biosynthetic network in Arabidopsis thaliana.Plant MetGenMAP: an integrative analysis system for plant systems biology.NAC transcription factors, NST1 and NST3, are key regulators of the formation of secondary walls in woody tissues of Arabidopsis.From correlation to causation: analysis of metabolomics data using systems biology approaches.Gene Discovery of Characteristic Metabolic Pathways in the Tea Plant (Camellia sinensis) Using 'Omics'-Based Network Approaches: A Future Perspective.PaintOmics 3: a web resource for the pathway analysis and visualization of multi-omics data.Beyond Metabolomics: A Review of Multi-Omics-Based Approaches Potential of Oryza officinalis to augment the cold tolerance genetic mechanisms of Oryza sativa by network complementation

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P2860

KaPPA-view: a web-based analysis tool for integration of transcript and metabolite data on plant metabolic pathway maps.

http://www.wikidata.org/entity/Q30993886

description

2005 nî lūn-bûn

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2005 թուականի Յուլիսին հրատարակուած գիտական յօդուած

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2005 թվականի հուլիսին հրատարակված գիտական հոդված

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2005年の論文

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KaPPA-view: a web-based analys ...... plant metabolic pathway maps.

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Plant Physiology

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KaPPA-view: a web-based analys ...... plant metabolic pathway maps.

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Daisuke Shibata

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Hideyuki Suzuki

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Norihiko Misawa

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Nozomu Sakurai

http://www.w3.org/2001/XMLSchema#string

Tanetoshi Koyama

http://www.w3.org/2001/XMLSchema#string

Toshiaki Tokimatsu

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Toshiaki Umezawa

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P2860

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. japonica)

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica)

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

AraCyc: a biochemical pathway database for Arabidopsis

Graph-based iterative Group Analysis enhances microarray interpretation

PathMAPA: a tool for displaying gene expression and performing statistical tests on metabolic pathways at multiple levels for Arabidopsis

The KEGG databases at GenomeNet.

MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes

Comprehensive post-genomic data analysis approaches integrating biochemical pathway maps.

Arabidopsis genes involved in acyl lipid metabolism. A 2003 census of the candidates, a study of the distribution of expressed sequence tags in organs, and a web-based database.

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1289-1300

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scholarly article

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10.1104/PP.105.060525

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3

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P478

138

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Kazuhiko Nishitani

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2005-07-01T00:00:00Z

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7734615

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16010003

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1176402

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