Bio++: efficient extensible libraries and tools for computational molecular evolution. - Test2 - elhamkhani - TriplyDB

Bio++: efficient extensible libraries and tools for computational molecular evolution.

Bio++: efficient extensible libraries and tools for computational molecular evolution.

http://www.wikidata.org/entity/Q31117981

about

Adaptive Protein Evolution in Animals and the Effective Population Size Hypothesis Coordinated Evolution of Influenza A Surface Proteins Reconstruction of an ancestral Yersinia pestis genome and comparison with an ancient sequence Quantifying evolutionary constraints on B-cell affinity maturation Integrative modeling of gene and genome evolution roots the archaeal tree of life Phylogenetic stochastic mapping without matrix exponentiation.SENCA: A Multilayered Codon Model to Study the Origins and Dynamics of Codon Usage.Kr/Kc but not dN/dS correlates positively with body mass in birds, raising implications for inferring lineage-specific selection.Toward more accurate ancestral protein genotype-phenotype reconstructions with the use of species tree-aware gene trees.The bimodal distribution of genic GC content is ancestral to monocot species A novel Bayesian method for detection of APOBEC3-mediated hypermutation and its application to zoonotic transmission of simian foamy viruses.The phylogenetic likelihood library.GeLL: a generalized likelihood library for phylogenetic models.Optimization of sequence alignments according to the number of sequences vs. number of sites trade-off.Probabilistic modeling of the evolution of gene synteny within reconciled phylogenies.Evaluation of Ancestral Sequence Reconstruction Methods to Infer Nonstationary Patterns of Nucleotide Substitution Population genomics of sexual and asexual lineages in fissiparous ribbon worms (Lineus, Nemertea): hybridization, polyploidy and the Meselson effect.Introgression maintains the genetic integrity of the mating-type determining chromosome of the fungus Neurospora tetrasperma Clustering Genes of Common Evolutionary History.Accurate Measurement of the Effects of All Amino-Acid Mutations on Influenza Hemagglutinin.Nineteenth century French rose (Rosa sp.) germplasm shows a shift over time from a European to an Asian genetic background Phylogenetic Gaussian process model for the inference of functionally important regions in protein tertiary structures.Hemizygosity Enhances Purifying Selection: Lack of Fast-Z Evolution in Two Satyrine Butterflies.Identification of positive selection in genes is greatly improved by using experimentally informed site-specific models.phydms: software for phylogenetic analyses informed by deep mutational scanning.High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development.Incomplete Lineage Sorting in Mammalian Phylogenomics.Transcriptome population genomics reveals severe bottleneck and domestication cost in the African rice (Oryza glaberrima).ecceTERA: comprehensive gene tree-species tree reconciliation using parsimony.Population genomics of eusocial insects: the costs of a vertebrate-like effective population size.DeCoSTAR: Reconstructing the Ancestral Organization of Genes or Genomes Using Reconciled Phylogenies.MafFilter: a highly flexible and extensible multiple genome alignment files processor Large Variation in the Ratio of Mitochondrial to Nuclear Mutation Rate across Animals: Implications for Genetic Diversity and the Use of Mitochondrial DNA as a Molecular Marker.Domestication rewired gene expression and nucleotide diversity patterns in tomato.Molecular Evolution of Freshwater Snails with Contrasting Mating Systems.Comparative population genomics in animals uncovers the determinants of genetic diversity.Unbiased estimate of synonymous and non-synonymous substitution rates with non-stationary base composition.Effective online Bayesian phylogenetics via sequential Monte Carlo with guided proposals.Ancestral Reconstruction of a Pre-LUCA Aminoacyl-tRNA Synthetase Ancestor Supports the Late Addition of Trp to the Genetic Code.FuncPatch: a web server for the fast Bayesian inference of conserved functional patches in protein 3D structures.

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P2860

Bio++: efficient extensible libraries and tools for computational molecular evolution.

http://www.wikidata.org/entity/Q31117981

description

2013 nî lūn-bûn

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2013 թուականի Մայիսին հրատարակուած գիտական յօդուած

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2013 թվականի մայիսին հրատարակված գիտական հոդված

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2013年の論文

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2013年論文

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2013年論文

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2013年論文

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2013年論文

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2013年論文

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2013年论文

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Bio++: efficient extensible libraries and tools for computational molecular evolution.

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Bio++: efficient extensible libraries and tools for computational molecular evolution.

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Bio++: efficient extensible libraries and tools for computational molecular evolution.

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Bio++: efficient extensible libraries and tools for computational molecular evolution.

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Bio++: efficient extensible libraries and tools for computational molecular evolution.

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Bio++: efficient extensible libraries and tools for computational molecular evolution.

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Molecular Biology and Evolution

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Bio++: efficient extensible libraries and tools for computational molecular evolution

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Annabelle Haudry

http://www.w3.org/2001/XMLSchema#string

Benoît Nabholz

http://www.w3.org/2001/XMLSchema#string

Céline Scornavacca

http://www.w3.org/2001/XMLSchema#string

David Fournier

http://www.w3.org/2001/XMLSchema#string

Khalid Belkhir

http://www.w3.org/2001/XMLSchema#string

Laurent Guéguen

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Loïc Dachary

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Manolo Gouy

http://www.w3.org/2001/XMLSchema#string

Nicolas C Rochette

http://www.w3.org/2001/XMLSchema#string

Nicolas Galtier

http://www.w3.org/2001/XMLSchema#string

P2860

Databases of homologous gene families for comparative genomics

Evolution of the Structure of Ferredoxin Based on Living Relics of Primitive Amino Acid Sequences

PAML 4: phylogenetic analysis by maximum likelihood

Adaptive protein evolution at the Adh locus in Drosophila

A branch-heterogeneous model of protein evolution for efficient inference of ancestral sequences

Phylogenetic modeling of lateral gene transfer reconstructs the pattern and relative timing of speciations

Construction of phylogenetic trees

Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level

BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data

Bio++: a set of C++ libraries for sequence analysis, phylogenetics, molecular evolution and population genetics.

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1745-1750

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scholarly article

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10.1093/MOLBEV/MST097

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8

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P478

30

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Bastien Boussau

Julien Y Dutheil

Mathieu Groussin

Aurélien Bernard

P577

2013-05-21T00:00:00Z

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236933392

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23699471

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computational biology