Integration of small-angle X-ray scattering data into structural modeling of proteins and their assemblies
about
Dynamic Viral Glycoprotein Machines: Approaches for Probing Transient States That Drive Membrane FusionIntegrative Modeling of Macromolecular Assemblies from Low to Near-Atomic ResolutionReconstruction of SAXS Profiles from Protein StructuresComputational modeling of membrane proteinsStructures of the autoproteolytic domain from theSaccharomyces cerevisiaenuclear pore complex component, Nup145Structure of the C-terminal domain of Saccharomyces cerevisiae Nup133, a component of the nuclear pore complexAtomic structure of the nuclear pore complex targeting domain of a nup116 homologue from the yeast, Candida glabrataConformational transitions upon ligand binding: holo-structure prediction from apo conformationsDeveloping advanced X-ray scattering methods combined with crystallography and computationSubstrate-specific reorganization of the conformational ensemble of CSK implicates novel modes of kinase functionProteins at work: a combined small angle X-RAY scattering and theoretical determination of the multiple structures involved on the protein kinase functional landscapeALMOST: an all atom molecular simulation toolkit for protein structure determination.Contact-assisted protein structure modeling by global optimization in CASP11.Blind testing of cross-linking/mass spectrometry hybrid methods in CASP11.Sampling Enrichment toward Target Structures Using Hybrid Molecular Dynamics-Monte Carlo Simulations.Calculation of accurate small angle X-ray scattering curves from coarse-grained protein modelsAutomated minimization of steric clashes in protein structuresAccurate flexible fitting of high-resolution protein structures to small-angle x-ray scattering data using a coarse-grained model with implicit hydration shell.Improving protein template recognition by using small-angle x-ray scattering profiles.Atomic-resolution structural information from scattering experiments on macromolecules in solution.A hierarchical algorithm for fast Debye summation with applications to small angle scatteringUCSF Chimera, MODELLER, and IMP: an integrated modeling system.Average conformations determined from PRE data provide high-resolution maps of transient tertiary interactions in disordered proteins.Recovering a representative conformational ensemble from underdetermined macromolecular structural data.Structural characterization of a flexible two-domain protein in solution using small angle X-ray scattering and NMR data.Ku and DNA-dependent protein kinase dynamic conformations and assembly regulate DNA binding and the initial non-homologous end joining complex.Integrative structure modeling of macromolecular assemblies from proteomics dataDetermining Complex Structures using Docking Method with Single Particle Scattering DataBridging the solution divide: comprehensive structural analyses of dynamic RNA, DNA, and protein assemblies by small-angle X-ray scattering.FoXS: a web server for rapid computation and fitting of SAXS profilesCharacterization of protein flexibility using small-angle x-ray scattering and amplified collective motion simulationsMultidomain assembled states of Hck tyrosine kinase in solution.Low-resolution molecular models reveal the oligomeric state of the PPAR and the conformational organization of its domains in solution.Integrative structural modeling with small angle X-ray scattering profiles.SAXS ensemble refinement of ESCRT-III CHMP3 conformational transitionsMacromolecular docking restrained by a small angle X-ray scattering profile.SoftWAXS: a computational tool for modeling wide-angle X-ray solution scattering from biomolecules.Characterization of proteins with wide-angle X-ray solution scattering (WAXS)On the usefulness of ion-mobility mass spectrometry and SAXS data in scoring docking decoys.Methods for SAXS-based structure determination of biomolecular complexes.
P2860
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P2860
Integration of small-angle X-ray scattering data into structural modeling of proteins and their assemblies
description
2008 nî lūn-bûn
@nan
2008 թուականի Յուլիսին հրատարակուած գիտական յօդուած
@hyw
2008 թվականի հուլիսին հրատարակված գիտական հոդված
@hy
2008年の論文
@ja
2008年論文
@yue
2008年論文
@zh-hant
2008年論文
@zh-hk
2008年論文
@zh-mo
2008年論文
@zh-tw
2008年论文
@wuu
name
Integration of small-angle X-r ...... proteins and their assemblies
@ast
Integration of small-angle X-r ...... proteins and their assemblies
@en
type
label
Integration of small-angle X-r ...... proteins and their assemblies
@ast
Integration of small-angle X-r ...... proteins and their assemblies
@en
prefLabel
Integration of small-angle X-r ...... proteins and their assemblies
@ast
Integration of small-angle X-r ...... proteins and their assemblies
@en
P2093
P2860
P1476
Integration of small-angle X-r ...... proteins and their assemblies
@en
P2093
Benjamin Webb
David A Agard
Friedrich Förster
Hiro Tsuruta
Kristin A Krukenberg
P2860
P304
P356
10.1016/J.JMB.2008.07.074
P407
P50
P577
2008-07-31T00:00:00Z