Mechanical unfolding of RNA: from hairpins to structures with internal multiloops. - Test2 - elhamkhani - TriplyDB

Mechanical unfolding of RNA: from hairpins to structures with internal multiloops.

Mechanical unfolding of RNA: from hairpins to structures with internal multiloops.

http://www.wikidata.org/entity/Q33259722

about

Coarse-grained free energy functions for studying protein conformational changes: a double-well network model.Experimental and computational characterization of biological liquid crystals: a review of single-molecule bioassays Raman tweezers and their application to the study of singly trapped eukaryotic cells.Prediction of RNA multiloop and pseudoknot conformations from a lattice-based, coarse-grain tertiary structure model.Folding and unfolding single RNA molecules under tension.Promoter melting triggered by bacterial RNA polymerase occurs in three steps.Internal strain regulates the nucleotide binding site of the kinesin leading head As Simple As Possible, but Not Simpler: Exploring the Fidelity of Coarse-Grained Protein Models for Simulated Force Spectroscopy.Weak temporal signals can synchronize and accelerate the transition dynamics of biopolymers under tension.Targeted binding of nucleocapsid protein transforms the folding landscape of HIV-1 TAR RNA.Revealing the bifurcation in the unfolding pathways of GFP by using single-molecule experiments and simulations.RNA under tension: Folding Landscapes, Kinetic partitioning Mechanism, and Molecular Tensegrity Helices 2 and 3 are the initiation sites in the PrP(C) → PrP(SC) transition RNA folding: conformational statistics, folding kinetics, and ion electrostatics.Force-dependent hopping rates of RNA hairpins can be estimated from accurate measurement of the folding landscapes Insights into chromatin fibre structure by in vitro and in silico single-molecule stretching experiments.Free-energy landscape of a hyperstable RNA tetraloop.Coarse-graining RNA nanostructures for molecular dynamics simulations.A new computational approach for mechanical folding kinetics of RNA hairpins.Kinetics of allosteric transitions in S-adenosylmethionine riboswitch are accurately predicted from the folding landscape.Refolding dynamics of stretched biopolymers upon force quench.Molecular dynamics study of the RNA ring nanostructure: a phenomenon of self-stabilization.Taming free energy landscapes with RNA chaperones.Perspective: Coarse-grained models for biomolecular systems.Sequence-dependent folding landscapes of adenine riboswitch aptamers.One-bead coarse-grained model for RNA dynamics.Transcription termination factor rho can displace streptavidin from biotinylated RNA.Coarse-grained prediction of RNA loop structures.Using simulations and kinetic network models to reveal the dynamics and functions of riboswitches Nonlocal helix formation is key to understanding S-adenosylmethionine-1 riboswitch function Computing the conformational entropy for RNA folds.Rate turnover in mechano-catalytic coupling: A model and its microscopic origin.Computational Methods for Modeling Aptamers and Designing Riboswitches.RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview.Protein collapse is encoded in the folded state architecture.Nonlinear irreversible thermodynamics of single-molecule experiments.Study of protein structural deformations under external mechanical perturbations by a coarse-grained simulation method.Development and Applications of Coarse-Grained Models for RNA Compaction and tensile forces determine the accuracy of folding landscape parameters from single molecule pulling experiments Molecular Modeling Applied to Nucleic Acid-Based Molecule Development

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Mechanical unfolding of RNA: from hairpins to structures with internal multiloops.

http://www.wikidata.org/entity/Q33259722

description

2006 nî lūn-bûn

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2006 թուականի Հոկտեմբերին հրատարակուած գիտական յօդուած

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2006 թվականի հոտեմբերին հրատարակված գիտական հոդված

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2006年の論文

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2006年論文

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2006年論文

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2006年論文

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2006年論文

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2006年論文

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2006年论文

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name

Mechanical unfolding of RNA: from hairpins to structures with internal multiloops.

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Mechanical unfolding of RNA: from hairpins to structures with internal multiloops.

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type

label

Mechanical unfolding of RNA: from hairpins to structures with internal multiloops.

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Mechanical unfolding of RNA: from hairpins to structures with internal multiloops.

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prefLabel

Mechanical unfolding of RNA: from hairpins to structures with internal multiloops.

@ast

Mechanical unfolding of RNA: from hairpins to structures with internal multiloops.

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BIOPHYSJ.106.093062

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Biophysical Journal

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Mechanical unfolding of RNA: from hairpins to structures with internal multiloops.

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D Thirumalai

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P2860

Solution structure of Cobalt(III)hexammine complexed to the GAAA tetraloop, and metal-ion binding to G.A mismatches

Structure of the bacteriophage phi29 DNA packaging motor

Structure of HCV IRES domain II determined by NMR

Rational design of inhibitors of HIV-1 TAR RNA through the stabilisation of electrostatic "hot spots"

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

Vienna RNA secondary structure server

Hierarchy and dynamics of RNA folding

Entropic elasticity of lambda-phage DNA

In vitro splicing of the ribosomal RNA precursor of Tetrahymena: involvement of a guanosine nucleotide in the excision of the intervening sequence

Native topology determines force-induced unfolding pathways in globular proteins.

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scholarly article

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10.1529/BIOPHYSJ.106.093062

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3

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Changbong Hyeon

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17028142

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q-bio/0609029

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