Global repeat discovery and estimation of genomic copy number in a large, complex genome using a high-throughput 454 sequence survey. - Test2 - elhamkhani - TriplyDB

Global repeat discovery and estimation of genomic copy number in a large, complex genome using a high-throughput 454 sequence survey.

Global repeat discovery and estimation of genomic copy number in a large, complex genome using a high-throughput 454 sequence survey.

http://www.wikidata.org/entity/Q33285710

about

What can you do with 0.1× genome coverage? A case study based on a genome survey of the scuttle fly Megaselia scalaris (Phoridae)Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution LTR retrotransposons contribute to genomic gigantism in plethodontid salamanders Reading between the LINEs to see into the past A fluorescence in situ hybridization system for karyotyping soybean Whole genome sequencing of a natural recombinant Toxoplasma gondii strain reveals chromosome sorting and local allelic variants Repetitive DNA in the pea (Pisum sativum L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data.Long Terminal Repeat Retrotransposon Content in Eight Diploid Sunflower Species Inferred from Next-Generation Sequence Data.Assessing the feasibility of GS FLX Pyrosequencing for sequencing the Atlantic salmon genome ReRep: computational detection of repetitive sequences in genome survey sequences (GSS).Low-pass shotgun sequencing of the barley genome facilitates rapid identification of genes, conserved non-coding sequences and novel repeats.Characterization of microsatellites and gene contents from genome shotgun sequences of mungbean (Vigna radiata (L.) Wilczek)Analysis of a c0t-1 library enables the targeted identification of minisatellite and satellite families in Beta vulgaris The peculiar landscape of repetitive sequences in the olive (Olea europaea L.) genome.Repetitive part of the banana (Musa acuminata) genome investigated by low-depth 454 sequencing Genome Size in North American Fireflies: Substantial Variation Likely Driven by Neutral Processes Rapid genotyping of soybean cultivars using high throughput sequencing.Next generation sequencing-based analysis of repetitive DNA in the model dioecious [corrected] plant Silene latifolia Independent, rapid and targeted loss of highly repetitive DNA in natural and synthetic allopolyploids of Nicotiana tabacum.The repetitive component of the sunflower genome as shown by different procedures for assembling next generation sequencing reads Review of the Application of Modern Cytogenetic Methods (FISH/GISH) to the Study of Reticulation (Polyploidy/Hybridisation).Fluorescence in situ hybridization-based karyotyping of soybean translocation lines.Repetitive DNA and Plant Domestication: Variation in Copy Number and Proximity to Genes of LTR-Retrotransposons among Wild and Cultivated Sunflower (Helianthus annuus) Genotypes.A new resource for the development of SSR markers: Millions of loci from a thousand plant transcriptomes EagleView: a genome assembly viewer for next-generation sequencing technologies.Independent Domestication of Two Old World Cotton Species.High-value oils from plants.Sequencing breakthroughs for genomic ecology and evolutionary biology.Repetitive sequences in plant nuclear DNA: types, distribution, evolution and function.Genome-wide analysis of LTR-retrotransposon diversity and its impact on the evolution of the genus Helianthus (L.).Partial sequencing reveals the transposable element composition of Coffea genomes and provides evidence for distinct evolutionary stories.Complexity reduction of polymorphic sequences (CRoPS): a novel approach for large-scale polymorphism discovery in complex genomes.Identification and characterisation of Short Interspersed Nuclear Elements in the olive tree (Olea europaea L.) genome.Potential applications of next generation sequencing to the genomics of Posidonia oceanica.Distinct Copy Number, Coding Sequence, and Locus Methylation Patterns Underlie Rhg1-Mediated Soybean Resistance to Soybean Cyst Nematode.Genomic and small RNA sequencing of Miscanthus x giganteus shows the utility of sorghum as a reference genome sequence for Andropogoneae grasses.Next-generation sequencing reveals the impact of repetitive DNA across phylogenetically closely related genomes of Orobanchaceae.Diploidization and genome size change in allopolyploids is associated with differential dynamics of low- and high-copy sequences.An assessment of karyotype restructuring in the neoallotetraploid Tragopogon miscellus (Asteraceae).

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Global repeat discovery and estimation of genomic copy number in a large, complex genome using a high-throughput 454 sequence survey.

http://www.wikidata.org/entity/Q33285710

description

2007 nî lūn-bûn

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2007 թուականի Մայիսին հրատարակուած գիտական յօդուած

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2007 թվականի մայիսին հրատարակված գիտական հոդված

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2007年の論文

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2007年論文

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2007年論文

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Global repeat discovery and es ...... hroughput 454 sequence survey.

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Global repeat discovery and es ...... hroughput 454 sequence survey.

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Global repeat discovery and es ...... hroughput 454 sequence survey.

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Global repeat discovery and es ...... hroughput 454 sequence survey.

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Global repeat discovery and es ...... hroughput 454 sequence survey.

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Matthew E Hudson

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P2860

Comparative analysis of the gene-dense ACHE/TFR2 region on human chromosome 7q22 with the orthologous region on mouse chromosome 5

Genome sequencing in microfabricated high-density picolitre reactors

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

Human-mouse alignments with BLASTZ

The TIGR Plant Repeat Databases: a collective resource for the identification of repetitive sequences in plants

BLAT--the BLAST-like alignment tool

Base-calling of automated sequencer traces using phred. II. Error probabilities

Pyrosequencing sheds light on DNA sequencing

A sequencing method based on real-time pyrophosphate

Genomic mapping by fingerprinting random clones: a mathematical analysis

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