Fast pairwise structural RNA alignments by pruning of the dynamical programming matrix. - Test2 - elhamkhani - TriplyDB

Fast pairwise structural RNA alignments by pruning of the dynamical programming matrix.

Fast pairwise structural RNA alignments by pruning of the dynamical programming matrix.

http://www.wikidata.org/entity/Q33302670

about

RNAalifold: improved consensus structure prediction for RNA alignments.TurboFold: iterative probabilistic estimation of secondary structures for multiple RNA sequences PARTS: probabilistic alignment for RNA joinT secondary structure prediction Unifying evolutionary and thermodynamic information for RNA folding of multiple alignments Computational analysis of noncoding RNAs Structured RNAs and synteny regions in the pig genome CRISPRmap: an automated classification of repeat conservation in prokaryotic adaptive immune systems Incorporating phylogenetic-based covarying mutations into RNAalifold for RNA consensus structure prediction A conditional random fields method for RNA sequence-structure relationship modeling and conformation sampling The tedious task of finding homologous noncoding RNA genes Simultaneous alignment and folding of protein sequences Detection of RNA structures in porcine EST data and related mammals.Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework.An efficient genetic algorithm for structural RNA pairwise alignment and its application to non-coding RNA discovery in yeast In-depth transcriptome analysis reveals novel TARs and prevalent antisense transcription in human cell lines Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data.PicXAA-R: efficient structural alignment of multiple RNA sequences using a greedy approach.Fast and accurate clustering of noncoding RNAs using ensembles of sequence alignments and secondary structures.From structure prediction to genomic screens for novel non-coding RNAs.Genome-scale NCRNA homology search using a Hamming distance-based filtration strategy.Computational approaches for RNA energy parameter estimation Multi-scale RNA comparison based on RNA triple vector curve representation Fast online and index-based algorithms for approximate search of RNA sequence-structure patterns.Classification and assessment tools for structural motif discovery algorithms SARA-Coffee web server, a tool for the computation of RNA sequence and structure multiple alignments RNA 3D Modules in Genome-Wide Predictions of RNA 2D Structure CHSalign: A Web Server That Builds upon Junction-Explorer and RNAJAG for Pairwise Alignment of RNA Secondary Structures with Coaxial Helical Stacking.RNA-TVcurve: a Web server for RNA secondary structure comparison based on a multi-scale similarity of its triple vector curve representation.Comparative genomics beyond sequence-based alignments: RNA structures in the ENCODE regions.STAR3D: a stack-based RNA 3D structural alignment tool Co-regulated expression of alpha and beta mRNAs encoding HLA-DR surface heterodimers is mediated by the MHCII RNA operon Genome-wide polysome profiling reveals an inflammation-responsive posttranscriptional operon in gamma interferon-activated monocytes Stochastic sampling of the RNA structural alignment space.De novo prediction of structured RNAs from genomic sequences.Computational prediction and biochemical characterization of novel RNA aptamers to Rift Valley fever virus nucleocapsid protein Efficient alignment of RNAs with pseudoknots using sequence alignment constraints.RNAscClust: clustering RNA sequences using structure conservation and graph based motifs.Faster computation of exact RNA shape probabilities.Foldalign 2.5: multithreaded implementation for pairwise structural RNA alignment.A novel approach to represent and compare RNA secondary structures.

P2860

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P2860

Fast pairwise structural RNA alignments by pruning of the dynamical programming matrix.

http://www.wikidata.org/entity/Q33302670

description

2007 nî lūn-bûn

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2007 թուականի Օգոստոսին հրատարակուած գիտական յօդուած

@hyw

2007 թվականի օգոստոսին հրատարակված գիտական հոդված

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2007年の論文

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2007年論文

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2007年論文

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2007年論文

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2007年論文

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2007年論文

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2007年论文

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name

Fast pairwise structural RNA alignments by pruning of the dynamical programming matrix.

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Fast pairwise structural RNA alignments by pruning of the dynamical programming matrix.

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Fast pairwise structural RNA alignments by pruning of the dynamical programming matrix.

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type

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Fast pairwise structural RNA alignments by pruning of the dynamical programming matrix.

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Fast pairwise structural RNA alignments by pruning of the dynamical programming matrix.

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Fast pairwise structural RNA alignments by pruning of the dynamical programming matrix.

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prefLabel

Fast pairwise structural RNA alignments by pruning of the dynamical programming matrix.

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Fast pairwise structural RNA alignments by pruning of the dynamical programming matrix.

@en

Fast pairwise structural RNA alignments by pruning of the dynamical programming matrix.

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PLOS Computational Biology

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Fast pairwise structural RNA alignments by pruning of the dynamical programming matrix.

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Elfar Torarinsson

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Jakob H Havgaard

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P2860

A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure

Identification and classification of conserved RNA secondary structures in the human genome

Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering

Mfold web server for nucleic acid folding and hybridization prediction

Accelerated probabilistic inference of RNA structure evolution

A benchmark of multiple sequence alignment programs upon structural RNAs.

An mRNA structure that controls gene expression by binding FMN

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

The Ribonuclease P Database

5S Ribosomal RNA Database

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1896-1908

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