Screening non-coding RNAs in transcriptomes from neglected species using PORTRAIT: case study of the pathogenic fungus Paracoccidioides brasiliensis. - Test2 - elhamkhani - TriplyDB

Screening non-coding RNAs in transcriptomes from neglected species using PORTRAIT: case study of the pathogenic fungus Paracoccidioides brasiliensis.

Screening non-coding RNAs in transcriptomes from neglected species using PORTRAIT: case study of the pathogenic fungus Paracoccidioides brasiliensis.

http://www.wikidata.org/entity/Q33490266

about

Computational approaches towards understanding human long non-coding RNA biology Long Noncoding RNAs: A New Regulatory Code in Metabolic Control Transcriptome analyses of primitively eusocial wasps reveal novel insights into the evolution of sociality and the origin of alternative phenotypes Novel long noncoding RNAs (lncRNAs) in myogenesis: a miR-31 overlapping lncRNA transcript controls myoblast differentiation iSeeRNA: identification of long intergenic non-coding RNA transcripts from transcriptome sequencing data.De novo transcriptome assembly from inflorescence of Orchis italica: analysis of coding and non-coding transcripts.Extensive local gene duplication and functional divergence among paralogs in Atlantic salmon Promoter analysis reveals globally differential regulation of human long non-coding RNA and protein-coding genes.Transcriptomic analysis of the mussel Elliptio complanata identifies candidate stress-response genes and an abundance of novel or noncoding transcripts De novo assembly and transcriptome analysis of the Mediterranean fruit fly Ceratitis capitata early embryos.Examples of sequence conservation analyses capture a subset of mouse long non-coding RNAs sharing homology with fish conserved genomic elements.Inferring bona fide transfrags in RNA-Seq derived-transcriptome assemblies of non-model organisms.De novo assembly and sex-specific transcriptome profiling in the sand fly Phlebotomus perniciosus (Diptera, Phlebotominae), a major Old World vector of Leishmania infantum.Transcriptator: An Automated Computational Pipeline to Annotate Assembled Reads and Identify Non Coding RNA.Characterization and analysis of long non-coding rna (lncRNA) in In Vitro- and Ex Vivo-derived cardiac progenitor cells.Detecting and comparing non-coding RNAs in the high-throughput era The Tetraodon nigroviridis reference transcriptome: developmental transition, length retention and microsynteny of long non-coding RNAs in a compact vertebrate genome lncScore: alignment-free identification of long noncoding RNA from assembled novel transcripts LncRNAs in vertebrates: advances and challenges.Identification and functional analysis of long intergenic noncoding RNA genes in porcine pre-implantation embryonic development.Long non-coding RNA identification over mouse brain development by integrative modeling of chromatin and genomic features Transcriptome characteristics of filamentous fungi deduced using high-throughput analytical technologies.The transcriptome of NaCl-treated Limonium bicolor leaves reveals the genes controlling salt secretion of salt gland.Comparative transcriptome analysis of developmental stages of the Limonium bicolor leaf generates insights into salt gland differentiation.Study strategies for long non-coding RNAs and their roles in regulating gene expression.CPC2: a fast and accurate coding potential calculator based on sequence intrinsic features.CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model YeATS - a tool suite for analyzing RNA-seq derived transcriptome identifies a highly transcribed putative extensin in heartwood/sapwood transition zone in black walnut.Knowledge-based reasoning to annotate noncoding RNA using multi-agent system.CNCTDiscriminator: coding and noncoding transcript discriminator - an excursion through hypothesis learning and ensemble learning approaches.ptRNApred: computational identification and classification of post-transcriptional RNA Annocript: a flexible pipeline for the annotation of transcriptomes able to identify putative long noncoding RNAs.DDX5/p68 associated lncRNA LOC284454 is differentially expressed in human cancers and modulates gene expression.De novo transcriptome assembly and developmental mode specific gene expression of Pygospio elegans.lncRNA-MFDL: identification of human long non-coding RNAs by fusing multiple features and using deep learning.Expression of Antisense Long Noncoding RNAs as Potential Regulators in Rainbow Trout with Different Tolerance to Plant-Based Diets.De novo assembly and characterizing of the culm-derived meta-transcriptome from the polyploid sugarcane genome based on coding transcripts.Transcriptomic Profiling of Fruit Development in Black Raspberry Rubus coreanus.

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P2860

Screening non-coding RNAs in transcriptomes from neglected species using PORTRAIT: case study of the pathogenic fungus Paracoccidioides brasiliensis.

http://www.wikidata.org/entity/Q33490266

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2009 nî lūn-bûn

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2009 թուականի Օգոստոսին հրատարակուած գիտական յօդուած

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2009 թվականի օգոստոսին հրատարակված գիտական հոդված

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Screening non-coding RNAs in t ...... Paracoccidioides brasiliensis.

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Roberto T Arrial

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Distinguishing protein-coding from non-coding RNAs through support vector machines.

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