Pan-genome sequence analysis using Panseq: an online tool for the rapid analysis of core and accessory genomic regions - Test2 - elhamkhani - TriplyDB

Pan-genome sequence analysis using Panseq: an online tool for the rapid analysis of core and accessory genomic regions

Pan-genome sequence analysis using Panseq: an online tool for the rapid analysis of core and accessory genomic regions

http://www.wikidata.org/entity/Q33693333

about

A brief review of software tools for pangenomics Pan-genomic analysis to redefine species and subspecies based on quantum discontinuous variation: the Klebsiella paradigm Genotypic and phenotypic analyses of a Pseudomonas aeruginosa chronic bronchiectasis isolate reveal differences from cystic fibrosis and laboratory strains.Signatures of adaptation in human invasive Salmonella Typhimurium ST313 populations from sub-Saharan Africa.Genomic heterogeneity and ecological speciation within one subspecies of Bacillus subtilis Pan-PCR, a computational method for designing bacterium-typing assays based on whole-genome sequence data First step in using molecular data for microbial food safety risk assessment; hazard identification of Escherichia coli O157:H7 by coupling genomic data with in vitro adherence to human epithelial cells.Escherichia coli O157:H7 strains harbor at least three distinct sequence types of Shiga toxin 2a-converting phages Antibiotic Resistance, Core-Genome and Protein Expression in IncHI1 Plasmids in Salmonella Typhimurium PanWeb: A web interface for pan-genomic analysis.Genome sequence of adherent-invasive Escherichia coli and comparative genomic analysis with other E. coli pathotypes Distinct Biological Potential of Streptococcus gordonii and Streptococcus sanguinis Revealed by Comparative Genome Analysis.Complete genome sequence of the Bifidobacterium animalis subspecies lactis BL3, preventive probiotics for acute colitis and colon cancer Characterization of the core and accessory genomes of Pseudomonas aeruginosa using bioinformatic tools Spine and AGEnt Genome sequencing and analysis of a type A Clostridium perfringens isolate from a case of bovine clostridial abomasitis.Unusual genome complexity in Lactobacillus salivarius JCM1046.Comparative genome analysis of 19 Ureaplasma urealyticum and Ureaplasma parvum strains A comparison of Shiga-toxin 2 bacteriophage from classical enterohemorrhagic Escherichia coli serotypes and the German E. coli O104:H4 outbreak strain.BPGA- an ultra-fast pan-genome analysis pipeline.A Novel Approach to Helicobacter pylori Pan-Genome Analysis for Identification of Genomic Islands.Dialects of the DNA uptake sequence in Neisseriaceae.MabsBase: a Mycobacterium abscessus genome and annotation database Comparative genomic analysis of clinical and environmental Vibrio vulnificus isolates revealed biotype 3 evolutionary relationships.Genomic characterisation of an endometrial pathogenic Escherichia coli strain reveals the acquisition of genetic elements associated with extra-intestinal pathogenicity.Comparative genomics of oral isolates of Streptococcus mutans by in silico genome subtraction does not reveal accessory DNA associated with severe early childhood caries.ITEP: an integrated toolkit for exploration of microbial pan-genomes Comparative genomics of isolates of a Pseudomonas aeruginosa epidemic strain associated with chronic lung infections of cystic fibrosis patients.Rapid genoserotyping tool for classification of Salmonella serovars.Viral genomics and bioinformatics.Genomic comparison of virulent and non-virulent Streptococcus agalactiae in fish.PGAP: pan-genomes analysis pipeline Novel Moraxella catarrhalis prophages display hyperconserved non-structural genes despite their genomic diversity.Living in an Extremely Polluted Environment: Clues from the Genome of Melanin-Producing Aeromonas salmonicida subsp. pectinolytica 34melT.Extending RAD tag analysis to microbial ecology: a comparison between MultiLocus Sequence Typing and 2b-RAD to investigate Listeria monocytogenes genetic structure.The pan-genome of Lactobacillus reuteri strains originating from the pig gastrointestinal tract Genome Analysis of Listeria monocytogenes Sequence Type 8 Strains Persisting in Salmon and Poultry Processing Environments and Comparison with Related Strains.Comparative Genomic Analysis of Escherichia coli O157:H7 Isolated from Super-Shedder and Low-Shedder Cattle The Identification of Novel Diagnostic Marker Genes for the Detection of Beer Spoiling Pediococcus damnosus Strains Using the BlAst Diagnostic Gene findEr Comparative Genomic Analysis Reveals a Possible Novel Non-Tuberculous Mycobacterium Species with High Pathogenic Potential.SuperPhy: predictive genomics for the bacterial pathogen Escherichia coli

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Pan-genome sequence analysis using Panseq: an online tool for the rapid analysis of core and accessory genomic regions

http://www.wikidata.org/entity/Q33693333

description

2010 nî lūn-bûn

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2010 թուականի Սեպտեմբերին հրատարակուած գիտական յօդուած

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2010 թվականի սեպտեմբերին հրատարակված գիտական հոդված

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2010年の論文

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2010年論文

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2010年論文

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2010年論文

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2010年論文

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2010年論文

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2010年论文

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name

Pan-genome sequence analysis u ...... and accessory genomic regions

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Pan-genome sequence analysis u ...... and accessory genomic regions

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Pan-genome sequence analysis u ...... and accessory genomic regions

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Pan-genome sequence analysis u ...... and accessory genomic regions

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Pan-genome sequence analysis u ...... and accessory genomic regions

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BMC Bioinformatics

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Pan-genome sequence analysis u ...... and accessory genomic regions

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Andre Villegas

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Cody Buchanan

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James E Thomas

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Victor P J Gannon

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Yongxiang Zhang

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P2860

Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome"

Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18

Genome sequence of Yersinia pestis, the causative agent of plague

Genome sequence of enterohaemorrhagic Escherichia coli O157:H7

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

MUSCLE: multiple sequence alignment with high accuracy and high throughput

Comparison of 61 sequenced Escherichia coli genomes

Mapping short DNA sequencing reads and calling variants using mapping quality scores

Database resources of the National Center for Biotechnology Information

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1471-2105-11-461

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461

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11

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Andrew M. Kropinski

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2010-09-15T00:00:00Z

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46280735

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1031672096

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20843356

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2949892

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