Methods for comprehensive experimental identification of RNA-protein interactions - Test2 - elhamkhani - TriplyDB

Methods for comprehensive experimental identification of RNA-protein interactions

Methods for comprehensive experimental identification of RNA-protein interactions

http://www.wikidata.org/entity/Q33745576

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Non-coding yet non-trivial: a review on the computational genomics of lincRNAs Specificity and nonspecificity in RNA-protein interactions HaloTag technology: a versatile platform for biomedical applications IPMiner: hidden ncRNA-protein interaction sequential pattern mining with stacked autoencoder for accurate computational prediction Analysis of sequencing data for probing RNA secondary structures and protein-RNA binding in studying posttranscriptional regulations.Bioinformatic tools for analysis of CLIP ribonucleoprotein data Genome-Wide Detection of Small Regulatory RNAs in Deep-Sea Bacterium Shewanella piezotolerans WP3 The Xist lncRNA interacts directly with SHARP to silence transcription through HDAC3.Extensive cross-regulation of post-transcriptional regulatory networks in Drosophila Electrophilic activity-based RNA probes reveal a self-alkylating RNA for RNA labeling.Long noncoding RNAs: an emerging link between gene regulation and nuclear organization Ribonomic approaches to study the RNA-binding proteome.Simultaneous generation of many RNA-seq libraries in a single reaction Identification of novel proteins binding the AU-rich element of α-prothymosin mRNA through the selection of open reading frames (RIDome).AnnoLnc: a web server for systematically annotating novel human lncRNAs Insight into lncRNA biology using hybridization capture analyses.Protein-RNA networks revealed through covalent RNA marks Detection of RNA-Protein Interactions in Living Cells with SHAPE.Biochemical Methods To Investigate lncRNA and the Influence of lncRNA:Protein Complexes on Chromatin ARiBo pull-down for riboproteomic studies based on label-free quantitative mass spectrometry.Identifying proteins that bind to specific RNAs - focus on simple repeat expansion diseases.LncRNAs in vertebrates: advances and challenges.Emerging roles for long noncoding RNAs in skeletal biology and disease.RNA and Proteins: Mutual Respect.De-repressing LncRNA-Targeted Genes to Upregulate Gene Expression: Focus on Small Molecule Therapeutics Purification of Transcript-Specific mRNP Complexes Formed In Vivo from Saccharomyces cerevisiae.RNA complex purification using high-affinity fluorescent RNA aptamer tags.Revealing protein-lncRNA interaction The contribution of mass spectrometry-based proteomics to understanding epigenetics.Pan-Cancer Analyses Reveal Long Intergenic Non-Coding RNAs Relevant to Tumor Diagnosis, Subtyping and Prognosis.Methods to Study Long Noncoding RNA Biology in Cancer.Native Top-Down Mass Spectrometry of TAR RNA in Complexes with a Wild-Type tat Peptide for Binding Site Mapping.Novel players in X inactivation: insights into Xist-mediated gene silencing and chromosome conformation.Computational Methods for Annotation Transfers from Sequence.RNA structure, binding, and coordination in Arabidopsis.Probing Long Non-coding RNA-Protein Interactions.RNAcommender: genome-wide recommendation of RNA-protein interactions.A systematic analysis of the RNA-targeting potential of secreted bacterial effector proteins.A MOTIF-BASED METHOD FOR PREDICTING INTERFACIAL RESIDUES IN BOTH THE RNA AND PROTEIN COMPONENTS OF PROTEIN-RNA COMPLEXES.A Novel Method to Quantify RNA-Protein Interactions In Situ Using FMTRIP and Proximity Ligation.

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Methods for comprehensive experimental identification of RNA-protein interactions

http://www.wikidata.org/entity/Q33745576

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2014 nî lūn-bûn

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2014 թուականի Յունուարին հրատարակուած գիտական յօդուած

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2014年の論文

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Methods for comprehensive experimental identification of RNA-protein interactions

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Methods for comprehensive experimental identification of RNA-protein interactions

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Methods for comprehensive experimental identification of RNA-protein interactions

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Methods for comprehensive experimental identification of RNA-protein interactions

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Methods for comprehensive experimental identification of RNA-protein interactions

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Colleen A McHugh

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Mitchell Guttman

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Pamela Russell

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P2860

Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system

Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast

High levels of RNA-editing site conservation amongst 15 laboratory mouse strains

Differential expression analysis for sequence count data

Long noncoding RNA as modular scaffold of histone modification complexes

Mapping and quantifying mammalian transcriptomes by RNA-Seq

Non–coding RNA genes and the modern RNA world

The cellular EJC interactome reveals higher-order mRNP structure and an EJC-SR protein nexus

Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq

Insights into RNA biology from an atlas of mammalian mRNA-binding proteins

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