An iterative workflow for mining the human intestinal metaproteome. - Test2 - elhamkhani - TriplyDB

An iterative workflow for mining the human intestinal metaproteome.

An iterative workflow for mining the human intestinal metaproteome.

http://www.wikidata.org/entity/Q33786240

about

Intestinal microbiota in human health and disease: the impact of probiotics Intestinal microbiota in functional bowel disorders: a Rome foundation report The interplay between microbiota and inflammation: lessons from peritonitis and sepsis Graft-versus-host disease biomarkers: omics and personalized medicine Proteomic tools to decipher microbial community structure and functioning A comprehensive and scalable database search system for metaproteomics Microbial metaproteomics for characterizing the range of metabolic functions and activities of human gut microbiota Faecal Metaproteomic Analysis Reveals a Personalized and Stable Functional Microbiome and Limited Effects of a Probiotic Intervention in Adults Monitoring Perinatal Gut Microbiota in Mouse Models by Mass Spectrometry Approaches: Parental Genetic Background and Breastfeeding Effects Navigating through metaproteomics data: a logbook of database searching.Metaproteomic data analysis at a glance: advances in computational microbial community proteomics.Metaproteomic analysis of human gut microbiota: where are we heading?Comparative metaproteomics and diversity analysis of human intestinal microbiota testifies for its temporal stability and expression of core functions Microbes inside--from diversity to function: the case of Akkermansia Bacterial protein signals are associated with Crohn's disease.The function of our microbiota: who is out there and what do they do?Integrated metagenomics/metaproteomics reveals human host-microbiota signatures of Crohn's disease Bioinformatic progress and applications in metaproteogenomics for bridging the gap between genomic sequences and metabolic functions in microbial communities.Insights from quantitative metaproteomics and protein-stable isotope probing into microbial ecology.High-fat diet alters gut microbiota physiology in mice.Evaluating the impact of different sequence databases on metaproteome analysis: insights from a lab-assembled microbial mixture.Systems-based approaches to unravel multi-species microbial community functioning.Molecular ecological tools to decipher the role of our microbial mass in obesity.Metaproteomics: extracting and mining proteome information to characterize metabolic activities in microbial communities.Symbiosis, dysbiosis, and rebiosis-the value of metaproteomics in human microbiome monitoring.Enrichment or depletion? The impact of stool pretreatment on metaproteomic characterization of the human gut microbiota.Colonic metaproteomic signatures of active bacteria and the host in obesity.Application of density gradient for the isolation of the fecal microbial stool component and the potential use thereof.Exploring mixed microbial community functioning: recent advances in metaproteomics.A two-step database search method improves sensitivity in peptide sequence matches for metaproteomics and proteogenomics studies.Metaproteomics: harnessing the power of high performance mass spectrometry to identify the suite of proteins that control metabolic activities in microbial communities Critical decisions in metaproteomics: achieving high confidence protein annotations in a sea of unknowns Protein-based stable isotope probing (protein-SIP) in functional metaproteomics.Role of the intestinal microbiome in health and disease: from correlation to causation.Functional proteomics within the genus Lactobacillus.The impact of sequence database choice on metaproteomic results in gut microbiota studies.Pipasic: similarity and expression correction for strain-level identification and quantification in metaproteomics.Resources and tools for the high-throughput, multi-omic study of intestinal microbiota.Disseminating Metaproteomic Informatics Capabilities and Knowledge Using the Galaxy-P Framework.Studying microbial functionality within the gut ecosystem by systems biology.

P2860

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P2860

An iterative workflow for mining the human intestinal metaproteome.

http://www.wikidata.org/entity/Q33786240

description

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2011年の論文

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An iterative workflow for mining the human intestinal metaproteome.

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An iterative workflow for mining the human intestinal metaproteome.

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An iterative workflow for mining the human intestinal metaproteome.

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An iterative workflow for mining the human intestinal metaproteome.

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An iterative workflow for mining the human intestinal metaproteome.

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Carolin Kolmeder

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Catherine Juste

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Christian Beauvallet

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Joël Doré

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Koos Rooijers

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Mark de Been

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Sjef Boeren

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Willem M de Vos

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P2860

A dynamic partnership: Celebrating our gut flora

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

The gut flora as a forgotten organ

The COG database: new developments in phylogenetic classification of proteins from complete genomes

A human gut microbial gene catalogue established by metagenomic sequencing

Mass spectrometry-based proteomics

Commensal host-bacterial relationships in the gut

Gut flora in health and disease

PatternHunter: faster and more sensitive homology search

The host-microbe interface within the gut

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10.1186/1471-2164-12-6

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Peter J. Schaap

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2011-01-05T00:00:00Z

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49730903

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