Evaluating ortholog prediction algorithms in a yeast model clade.
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Orthology prediction methods: a quality assessment using curated protein familiesInferring Orthologs: Open Questions and PerspectivesStreamlining and core genome conservation among highly divergent members of the SAR11 cladeExploring Phylogenetic Relationships within Myriapoda and the Effects of Matrix Composition and Occupancy on Phylogenomic ReconstructionHow old is my gene?Toward community standards in the quest for orthologseggNOG v4.0: nested orthology inference across 3686 organismsStandardized benchmarking in the quest for orthologsEvaluating topological conflict in centipede phylogeny using transcriptomic data sets.An Effective Big Data Supervised Imbalanced Classification Approach for Ortholog Detection in Related Yeast SpeciesSalinity-induced changes in gene expression from anterior and posterior gills of Callinectes sapidus (Crustacea: Portunidae) with implications for crustacean ecological genomicsGenomic Data Quality Impacts Automated Detection of Lateral Gene Transfer in FungiUsing structural knowledge in the protein data bank to inform the search for potential host-microbe protein interactions in sequence space: application to Mycobacterium tuberculosis.Phylogenetic analysis of protein sequence data using the Randomized Axelerated Maximum Likelihood (RAXML) Program.Literature-based gene curation and proposed genetic nomenclature for cryptococcus.Diversification of the C-TERMINALLY ENCODED PEPTIDE (CEP) gene family in angiosperms, and evolution of plant-family specific CEP genes.MESSA: MEta-Server for protein Sequence Analysis.The impact of gene duplication, insertion, deletion, lateral gene transfer and sequencing error on orthology inference: a simulation studyMolecular phylogeny of a RING E3 ubiquitin ligase, conserved in eukaryotic cells and dominated by homologous components, the muskelin/RanBPM/CTLH complexPGAT: a multistrain analysis resource for microbial genomes.A transcriptomic approach to ribbon worm systematics (nemertea): resolving the pilidiophora problem.Rock, paper, scissors: harnessing complementarity in ortholog detection methods improves comparative genomic inferenceA phylogeny-based benchmarking test for orthology inference reveals the limitations of function-based validationA meta-approach for improving the prediction and the functional annotation of ortholog groups.Comparative genomic analysis of toxin-negative strains of Clostridium difficile from humans and animals with symptoms of gastrointestinal diseaseA New Orthology Assessment Method for Phylogenomic Data: Unrooted Phylogenetic Orthology.Copy number variation contributes to cryptic genetic variation in outbreak lineages of Cryptococcus gattii from the North American Pacific Northwest.A bioinformatics approach for integrated transcriptomic and proteomic comparative analyses of model and non-sequenced anopheline vectors of human malaria parasites.Inside the Pan-genome - Methods and Software OverviewIONS: Identification of Orthologs by Neighborhood and Similarity-an Automated Method to Identify Orthologs in Chromosomal Regions of Common Evolutionary Ancestry and its Application to Hemiascomycetous Yeasts.Evidence of Natural Hybridization in Brazilian Wild Lineages of Saccharomyces cerevisiae.The rapid evolution of an ohnolog contributes to the ecological specialization of incipient yeast species.Bacterial virulence phenotypes of Escherichia coli and host susceptibility determine risk for urinary tract infections.Finding the Subcellular Location of Barley, Wheat, Rice and Maize Proteins: The Compendium of Crop Proteins with Annotated Locations (cropPAL).A Rickettsiales symbiont of amoebae with ancient features.Modularized evolution in archaeal methanogens phylogenetic forest.The origin of parasitism gene in nematodes: evolutionary analysis through the construction of domain trees.Bidirectional best hits miss many orthologs in duplication-rich clades such as plants and animals.Inferring ancient divergences requires genes with strong phylogenetic signals.SMORE: Synteny Modulator of Repetitive Elements.
P2860
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P2860
Evaluating ortholog prediction algorithms in a yeast model clade.
description
2011 nî lūn-bûn
@nan
2011 թուականի Ապրիլին հրատարակուած գիտական յօդուած
@hyw
2011 թվականի ապրիլին հրատարակված գիտական հոդված
@hy
2011年の論文
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2011年学术文章
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2011年学术文章
@zh-cn
2011年学术文章
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2011年学术文章
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2011年学术文章
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2011年學術文章
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name
Evaluating ortholog prediction algorithms in a yeast model clade.
@ast
Evaluating ortholog prediction algorithms in a yeast model clade.
@en
type
label
Evaluating ortholog prediction algorithms in a yeast model clade.
@ast
Evaluating ortholog prediction algorithms in a yeast model clade.
@en
prefLabel
Evaluating ortholog prediction algorithms in a yeast model clade.
@ast
Evaluating ortholog prediction algorithms in a yeast model clade.
@en
P2860
P1433
P1476
Evaluating ortholog prediction algorithms in a yeast model clade.
@en
P2093
Leonidas Salichos
P2860
P304
P356
10.1371/JOURNAL.PONE.0018755
P407
P577
2011-04-13T00:00:00Z