A pause sequence enriched at translation start sites drives transcription dynamics in vivo - Test2 - elhamkhani - TriplyDB

A pause sequence enriched at translation start sites drives transcription dynamics in vivo

A pause sequence enriched at translation start sites drives transcription dynamics in vivo

http://www.wikidata.org/entity/Q33939698

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New Insights into the Functions of Transcription Factors that Bind the RNA Polymerase Secondary Channel RNA Exosome Regulates AID DNA Mutator Activity in the B Cell Genome Misincorporation by RNA polymerase is a major source of transcription pausing in vivo Base-pair-resolution genome-wide mapping of active RNA polymerases using precision nuclear run-on (PRO-seq).RNA polymerase pausing and nascent-RNA structure formation are linked through clamp-domain movement Kinetic competition during the transcription cycle results in stochastic RNA processing.Trigger-helix folding pathway and SI3 mediate catalysis and hairpin-stabilized pausing by Escherichia coli RNA polymerase.A Comprehensive, CRISPR-based Functional Analysis of Essential Genes in Bacteria.Bridged filaments of histone-like nucleoid structuring protein pause RNA polymerase and aid termination in bacteria Distinct pathways of RNA polymerase regulation by a phage-encoded factor.RNA polymerase-induced remodelling of NusA produces a pause enhancement complex.Unraveling the mechanistic features of RNA polymerase II termination by the 5'-3' exoribonuclease Rat1 Confidence, tolerance, and allowance in biological engineering: the nuts and bolts of living things.Visualizing translocation dynamics and nascent transcript errors in paused RNA polymerases in vivo.A kissing loop is important for btuB riboswitch ligand sensing and regulatory control.H-NS Facilitates Sequence Diversification of Horizontally Transferred DNAs during Their Integration in Host Chromosomes.Native elongating transcript sequencing reveals human transcriptional activity at nucleotide resolution.Two transcription pause elements underlie a σ70-dependent pause cycle.Genome-wide profiling of RNA polymerase transcription at nucleotide resolution in human cells with native elongating transcript sequencing.The primary σ factor in Escherichia coli can access the transcription elongation complex from solution in vivo.Temperature-Dependent Model of Multi-step Transcription Initiation in Escherichia coli Based on Live Single-Cell Measurements.Sequence-specific thermodynamic properties of nucleic acids influence both transcriptional pausing and backtracking in yeast.Production and characterization of a highly pure RNA polymerase holoenzyme from Mycobacterium tuberculosis.Transcription facilitated genome-wide recruitment of topoisomerase I and DNA gyrase Effects of cooperation between translating ribosome and RNA polymerase on termination efficiency of the Rho-independent terminator.Large-Effect Beneficial Synonymous Mutations Mediate Rapid and Parallel Adaptation in a Bacterium.A Two-Way Street: Regulatory Interplay between RNA Polymerase and Nascent RNA Structure.Regulation of transcriptional pausing through the secondary channel of RNA polymerase A universal transcription pause sequence is an element of initiation factor σ70-dependent pausing.What have single-molecule studies taught us about gene expression?RNA Polymerase Pausing during Initial Transcription.Control of transcriptional pausing by biased thermal fluctuations on repetitive genomic sequences.RNA polymerase gate loop guides the nontemplate DNA strand in transcription complexes.RNA secondary structures regulate three steps of Rho-dependent transcription termination within a bacterial mRNA leader.Operon mRNAs are organized into ORF-centric structures that predict translation efficiency.Regulation of transcription elongation and termination.Regulation of Transcript Elongation.Trigger loop of RNA polymerase is a positional, not acid-base, catalyst for both transcription and proofreading.Regulatory effects of cotranscriptional RNA structure formation and transitions.Mammalian NET-seq analysis defines nascent RNA profiles and associated RNA processing genome-wide

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A pause sequence enriched at translation start sites drives transcription dynamics in vivo

http://www.wikidata.org/entity/Q33939698

description

2014 nî lūn-bûn

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2014 թուականի Մայիսին հրատարակուած գիտական յօդուած

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2014 թվականի մայիսին հրատարակված գիտական հոդված

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2014年の論文

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2014年論文

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2014年論文

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2014年論文

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2014年論文

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2014年論文

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2014年论文

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name

A pause sequence enriched at t ...... transcription dynamics in vivo

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A pause sequence enriched at t ...... transcription dynamics in vivo

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type

label

A pause sequence enriched at t ...... transcription dynamics in vivo

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A pause sequence enriched at t ...... transcription dynamics in vivo

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prefLabel

A pause sequence enriched at t ...... transcription dynamics in vivo

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A pause sequence enriched at t ...... transcription dynamics in vivo

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SCIENCE.1251871

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A pause sequence enriched at t ...... transcription dynamics in vivo

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Carol A Gross

http://www.w3.org/2001/XMLSchema#string

Dhananjaya Nayak

http://www.w3.org/2001/XMLSchema#string

Jason M Peters

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Matthew H Larson

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Rachel A Mooney

http://www.w3.org/2001/XMLSchema#string

Robert Landick

http://www.w3.org/2001/XMLSchema#string

Tricia Windgassen

http://www.w3.org/2001/XMLSchema#string

P2860

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Direct observation of base-pair stepping by RNA polymerase

A general method of in vitro preparation and specific mutagenesis of DNA fragments: study of protein and DNA interactions

Structural basis of transcription initiation

Regulator trafficking on bacterial transcription units in vivo

Structural basis for transcription elongation by bacterial RNA polymerase

Two Structurally Independent Domains of E. coli NusG Create Regulatory Plasticity via Distinct Interactions with RNA Polymerase and Regulators

Structural basis of transcriptional pausing in bacteria.

The complete genome sequence of Escherichia coli K-12

WebLogo: A Sequence Logo Generator

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1042-1047

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scholarly article

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10.1126/SCIENCE.1251871

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6187

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344

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William Greenleaf

Jonathan Weissman

Steven M. Block

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2014-05-01T00:00:00Z

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262019904

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24789973

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4108260

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