Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052. - Test2 - elhamkhani - TriplyDB

Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052.

Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052.

http://www.wikidata.org/entity/Q33994087

about

Genomic medicine and lung diseases Development of a gene knockout system using mobile group II introns (Targetron) and genetic disruption of acid production pathways in Clostridium beijerinckii Multiscale computational models of complex biological systems.Constraining the metabolic genotype-phenotype relationship using a phylogeny of in silico methods iAK692: a genome-scale metabolic model of Spirulina platensis C1.Likelihood-based gene annotations for gap filling and quality assessment in genome-scale metabolic models Characterizing acetogenic metabolism using a genome-scale metabolic reconstruction of Clostridium ljungdahlii Revised phylogeny and novel horizontally acquired virulence determinants of the model soft rot phytopathogen Pectobacterium wasabiae SCC3193 ITEP: an integrated toolkit for exploration of microbial pan-genomes Development of a core Clostridium thermocellum kinetic metabolic model consistent with multiple genetic perturbations BacArena: Individual-based metabolic modeling of heterogeneous microbes in complex communities.Clostridium butyricum maximizes growth while minimizing enzyme usage and ATP production: metabolic flux distribution of a strain cultured in glycerol Exploring complex cellular phenotypes and model-guided strain design with a novel genome-scale metabolic model of Clostridium thermocellum DSM 1313 implementing an adjustable cellulosome.Genome-scale metabolic model in guiding metabolic engineering of microbial improvement.Systematic applications of metabolomics in metabolic engineering.Applications of genome-scale metabolic network model in metabolic engineering.Genome-scale modeling for metabolic engineering.BiKEGG: a COBRA toolbox extension for bridging the BiGG and KEGG databases.Metabolic modeling of clostridia: current developments and applications.System-level modeling of acetone-butanol-ethanol fermentation.Mathematical modelling of clostridial acetone-butanol-ethanol fermentation.Integrative modelling of pH-dependent enzyme activity and transcriptomic regulation of the acetone-butanol-ethanol fermentation of Clostridium acetobutylicum in continuous culture.Reconstruction and visualization of carbohydrate, N-glycosylation pathways in Pichia pastoris CBS7435 using computational and system biology approaches.Fermentation and genomic analysis of acetone-uncoupled butanol production by Clostridium tetanomorphum.A comparison of three pH control methods for revealing effects of undissociated butyric acid on specific butanol production rate in batch fermentation of Clostridium acetobutylicum.Rebalancing Redox to Improve Biobutanol Production by Clostridium tyrobutyricum.What mRNA Abundances Can Tell us about Metabolism Generation and Evaluation of a Genome-Scale Metabolic Network Model of Synechococcus elongatus PCC7942.Deriving metabolic engineering strategies from genome-scale modeling with flux ratio constraints.A shift in the dominant phenotype governs the pH-induced metabolic switch of Clostridium acetobutylicumin phosphate-limited continuous cultures.Amino acid catabolism-directed biofuel production in Clostridium sticklandii: An insight into model-driven systems engineering.In silico analysis of Clostridium acetobutylicum ATCC 824 metabolic response to an external electron supply.Optimizing genome-scale network reconstructions.Optimizing performance of semi-continuous cell culture in an ambr15™ microbioreactor using dynamic flux balance modeling.Hydrogen metabolic patterns driven by Clostridium-Streptococcus community shifts in a continuous stirred tank reactor.Coenzyme A-transferase-independent butyrate re-assimilation in Clostridium acetobutylicum-evidence from a mathematical model.Elementary mode analysis reveals that Clostridium acetobutylicum modulates its metabolic strategy under external stress.Studying the relationship between robustness against mutations in metabolic networks and lifestyle of organisms

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P2860

Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052.

http://www.wikidata.org/entity/Q33994087

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2011 թուականի Օգոստոսին հրատարակուած գիտական յօդուած

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2011 թվականի օգոստոսին հրատարակված գիտական հոդված

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Metabolic network reconstructi ...... idium beijerinckii NCIMB 8052.

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Metabolic network reconstructi ...... ridium beijerinckii NCIMB 8052

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Caroline B Milne

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Hans P Blaschek

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James A Eddy

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Ravali Raju

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Ryan S Senger

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Yong-Su Jin

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An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)

The RAST Server: rapid annotations using subsystems technology

BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions

KEGG: kyoto encyclopedia of genes and genomes

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

A protocol for generating a high-quality genome-scale metabolic reconstruction

Acetone-butanol fermentation revisited

The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes

The integrated microbial genomes (IMG) system

Non-fermentative pathways for synthesis of branched-chain higher alcohols as biofuels

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