Evolution of transcription factor binding sites in Mammalian gene regulatory regions: conservation and turnover. - Test2 - elhamkhani - TriplyDB

Evolution of transcription factor binding sites in Mammalian gene regulatory regions: conservation and turnover.

Evolution of transcription factor binding sites in Mammalian gene regulatory regions: conservation and turnover.

http://www.wikidata.org/entity/Q34135129

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Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project Early history of mammals is elucidated with the ENCODE multiple species sequencing data The diploid genome sequence of an individual human Chromatin landscape dictates HSF binding to target DNA elements PPARG binding landscapes in macrophages suggest a genome-wide contribution of PU.1 to divergent PPARG binding in human and mouse 8.2% of the Human genome is constrained: variation in rates of turnover across functional element classes in the human lineage De novo genesis of enhancers in vertebrates Fast-evolving noncoding sequences in the human genome A catalog of neutral and deleterious polymorphism in yeast Does positive selection drive transcription factor binding site turnover? A test with Drosophila cis-regulatory modules What fraction of the human genome is functional?Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding Defining functional DNA elements in the human genome Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences Human embryonic stem cell-derived neurons as a tool for studying neuroprotection and neurodegeneration Zinc-finger domains of the transcriptional repressor KLF15 bind multiple sites in rhodopsin and IRBP promoters including the CRS-1 and G-rich repressor elements MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model Distinct class of putative "non-conserved" promoters in humans: comparative studies of alternative promoters of human and mouse genes A model of the statistical power of comparative genome sequence analysis Conservation of regulatory elements between two species of Drosophila The architecture of mammalian ribosomal protein promoters Position specific variation in the rate of evolution in transcription factor binding sites Conservation and evolution of cis-regulatory systems in ascomycete fungi oPOSSUM: identification of over-represented transcription factor binding sites in co-expressed genes.ABS: a database of Annotated regulatory Binding Sites from orthologous promoters.Decoding the non-coding genome: elucidating genetic risk outside the coding genome Evolutionary and functional analysis of the tailless enhancer in Musca domestica and Drosophila melanogaster Binding site turnover produces pervasive quantitative changes in transcription factor binding between closely related Drosophila species Quantitative system drift compensates for altered maternal inputs to the gap gene network of the scuttle fly Megaselia abdita Functional characterization of motif sequences under purifying selection MISCORE: a new scoring function for characterizing DNA regulatory motifs in promoter sequences Waves of retrotransposon expansion remodel genome organization and CTCF binding in multiple mammalian lineages Massive turnover of functional sequence in human and other mammalian genomes Systematic identification of cis-regulatory sequences active in mouse and human embryonic stem cells Divergent evolution of human p53 binding sites: cell cycle versus apoptosis Detection of functional DNA motifs via statistical over-representation Massively parallel cis-regulatory analysis in the mammalian central nervous system Length polymorphism and head shape association among genes with polyglutamine repeats in the stalk-eyed fly, Teleopsis dalmanni.Genomic structure and expression of uncoupling protein 2 genes in rainbow trout (Oncorhynchus mykiss)Statistical tests for natural selection on regulatory regions based on the strength of transcription factor binding sites.

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Evolution of transcription factor binding sites in Mammalian gene regulatory regions: conservation and turnover.

http://www.wikidata.org/entity/Q34135129

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2002 nî lūn-bûn

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2002 թուականի Յուլիսին հրատարակուած գիտական յօդուած

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Evolution of transcription fac ...... ns: conservation and turnover.

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Evolution of transcription fac ...... ns: conservation and turnover.

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Evolution of transcription fac ...... ns: conservation and turnover.

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Evolution of transcription fac ...... ns: conservation and turnover.

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Evolution of transcription fac ...... ns: conservation and turnover.

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Evolution of transcription fac ...... ns: conservation and turnover.

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Evolution of transcription fac ...... ns: conservation and turnover.

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OXFORDJOURNALS.MOLBEV.A004169

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Molecular Biology and Evolution

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Evolution of transcription fac ...... ns: conservation and turnover.

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Andrew G Clark

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Emmanouil T Dermitzakis

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P2860

Active conservation of noncoding sequences revealed by three-way species comparisons

Comparative studies on mammalian Hoxc8 early enhancer sequence reveal a baleen whale-specific deletion of a cis-acting element

PipMaker--a web server for aligning two genomic DNA sequences

TRANSFAC: an integrated system for gene expression regulation.

Evolutionary parameters of the transcribed mammalian genome: an analysis of 2,820 orthologous rodent and human sequences.

Comparative analysis of noncoding regions of 77 orthologous mouse and human gene pairs

The NOTCH4 locus is associated with susceptibility to schizophrenia.

Identification of phylogenetic footprints in primate tumor necrosis factor-alpha promoters.

Mutually compensatory mutations during evolution of the tetramerization domain of tumor suppressor p53 lead to impaired hetero-oligomerization

Human-mouse genome comparisons to locate regulatory sites.

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1114-1121

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10.1093/OXFORDJOURNALS.MOLBEV.A004169

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7

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2002-07-01T00:00:00Z

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11293378

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