GC skew at the 5' and 3' ends of human genes links R-loop formation to epigenetic regulation and transcription termination - Test2 - elhamkhani - TriplyDB

GC skew at the 5' and 3' ends of human genes links R-loop formation to epigenetic regulation and transcription termination

GC skew at the 5' and 3' ends of human genes links R-loop formation to epigenetic regulation and transcription termination

http://www.wikidata.org/entity/Q34358463

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Out of balance: R-loops in human disease Fragile X-associated tremor/ataxia syndrome.Breaking bad: R-loops and genome integrity Effects of DNA supercoiling on chromatin architecture Integrator: surprisingly diverse functions in gene expression Replication stress in Mammalian cells and its consequences for mitosis Genetic instability in budding and fission yeast-sources and mechanisms Transcription-associated R-loop formation across the human FMR1 CGG-repeat region The deletion of rnhB in Mycobacterium smegmatis does not affect the level of RNase HII substrates or influence genome stability Evolution of the Antisense Overlap between Genes for Thyroid Hormone Receptor and Rev-erbα and Characterization of an Exonic G-Rich Element That Regulates Splicing of TRα2 mRNA Biological Processes Discovered by High-Throughput Sequencing.Production of Extrachromosomal MicroDNAs Is Linked to Mismatch Repair Pathways and Transcriptional Activity S1-DRIP-seq identifies high expression and polyA tracts as major contributors to R-loop formation.StochHMM: a flexible hidden Markov model tool and C++ library.Complexity of genetic mechanisms conferring nonuniformity of recombination in maize Mechanisms of genome instability induced by RNA-processing defects.A double-edged sword: R loops as threats to genome integrity and powerful regulators of gene expression Variable escape from X-chromosome inactivation: identifying factors that tip the scales towards expression Genome-wide profiling of yeast DNA:RNA hybrid prone sites with DRIP-chip Genome-wide distribution of RNA-DNA hybrids identifies RNase H targets in tRNA genes, retrotransposons and mitochondria Rescue from replication stress during mitosis.Transcription-coupled nucleotide excision repair factors promote R-loop-induced genome instability R-loops associated with triplet repeat expansions promote gene silencing in Friedreich ataxia and fragile X syndrome.A genome-wide analysis of Cas9 binding specificity using ChIP-seq and targeted sequence capture.RNA processing factors Swd2.2 and Sen1 antagonize RNA Pol III-dependent transcription and the localization of condensin at Pol III genes Head-to-head antisense transcription and R-loop formation promotes transcriptional activation.RNase HI Is Essential for Survival of Mycobacterium smegmatis.Complexities due to single-stranded RNA during antibody detection of genomic rna:dna hybrids.The Fanconi Anemia Pathway Protects Genome Integrity from R-loops.Dynamic Effects of Topoisomerase I Inhibition on R-Loops and Short Transcripts at Active Promoters Regulated Formation of lncRNA-DNA Hybrids Enables Faster Transcriptional Induction and Environmental Adaptation.Genome-wide DNA hypomethylation and RNA:DNA hybrid accumulation in Aicardi-Goutières syndrome.XRN2 Links Transcription Termination to DNA Damage and Replication Stress.GC skew defines distinct RNA polymerase pause sites in CpG island promoters.RNA:DNA hybrids in the human genome have distinctive nucleotide characteristics, chromatin composition, and transcriptional relationships.R loops regulate promoter-proximal chromatin architecture and cellular differentiation.The monoclonal S9.6 antibody exhibits highly variable binding affinities towards different R-loop sequences.Nascent RNA folding mitigates transcription-associated mutagenesis The spliceosome-associated protein Nrl1 suppresses homologous recombination-dependent R-loop formation in fission yeast.GC skew is a conserved property of unmethylated CpG island promoters across vertebrates

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GC skew at the 5' and 3' ends of human genes links R-loop formation to epigenetic regulation and transcription termination

http://www.wikidata.org/entity/Q34358463

description

2013 nî lūn-bûn

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2013 թուականի Յուլիսին հրատարակուած գիտական յօդուած

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2013 թվականի հուլիսին հրատարակված գիտական հոդված

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2013年の論文

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2013年論文

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2013年論文

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2013年論文

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2013年論文

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2013年论文

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name

GC skew at the 5' and 3' ends ...... and transcription termination

@ast

GC skew at the 5' and 3' ends ...... and transcription termination

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GC skew at the 5' and 3' ends ...... and transcription termination

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type

label

GC skew at the 5' and 3' ends ...... and transcription termination

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GC skew at the 5' and 3' ends ...... and transcription termination

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GC skew at the 5' and 3' ends ...... and transcription termination

@nl

prefLabel

GC skew at the 5' and 3' ends ...... and transcription termination

@ast

GC skew at the 5' and 3' ends ...... and transcription termination

@en

GC skew at the 5' and 3' ends ...... and transcription termination

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Genome Research

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GC skew at the 5' and 3' ends ...... and transcription termination

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Ian Korf

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Paul A Ginno

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Yoong Wearn Lim

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P2860

Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains

Model-based analysis of ChIP-Seq (MACS)

CpG island methylation in human lymphocytes is highly correlated with DNA sequence, repeats, and predicted DNA structure.

X-inactivation profile reveals extensive variability in X-linked gene expression in females

Nucleosome-interacting proteins regulated by DNA and histone methylation

Human senataxin resolves RNA/DNA hybrids formed at transcriptional pause sites to promote Xrn2-dependent termination

Integrative epigenomic mapping defines four main chromatin states in Arabidopsis

Human DNA methylomes at base resolution show widespread epigenomic differences

DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA

Fast and accurate short read alignment with Burrows-Wheeler transform

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