A multilevel model to address batch effects in copy number estimation using SNP arrays. - Test2 - elhamkhani - TriplyDB

A multilevel model to address batch effects in copy number estimation using SNP arrays.

A multilevel model to address batch effects in copy number estimation using SNP arrays.

http://www.wikidata.org/entity/Q34425384

about

affy2sv: an R package to pre-process Affymetrix CytoScan HD and 750K arrays for SNP, CNV, inversion and mosaicism calling The Growing Importance of CNVs: New Insights for Detection and Clinical Interpretation Tackling the widespread and critical impact of batch effects in high-throughput data Inheritance model introduces differential bias in CNV calls between parents and offspring Removing batch effects in analysis of expression microarray data: an evaluation of six batch adjustment methods.Software comparison for evaluating genomic copy number variation for Affymetrix 6.0 SNP array platform.Copy number polymorphisms near SLC2A9 are associated with serum uric acid concentrations Identification and validation of copy number variants using SNP genotyping arrays from a large clinical cohort Reconstructing DNA copy number by joint segmentation of multiple sequences SNP array analysis reveals novel genomic abnormalities including copy neutral loss of heterozygosity in anaplastic oligodendrogliomas.A model of binding on DNA microarrays: understanding the combined effect of probe synthesis failure, cross-hybridization, DNA fragmentation and other experimental details of affymetrix arrays.Sample processing obscures cancer-specific alterations in leukemic transcriptomes.Improving breast cancer survival analysis through competition-based multidimensional modeling.Family-Based Benchmarking of Copy Number Variation Detection Software.Integrity of Induced Pluripotent Stem Cell (iPSC) Derived Megakaryocytes as Assessed by Genetic and Transcriptomic Analysis.Genome-Wide Association of Copy Number Polymorphisms and Kidney Function.Getting DNA copy numbers without control samples.Current analysis platforms and methods for detecting copy number variation Comparative genomic and genetic analysis of glioblastoma-derived brain tumor-initiating cells and their parent tumors.Detection of clinically relevant copy-number variants by exome sequencing in a large cohort of genetic disorders Using the R Package crlmm for Genotyping and Copy Number Estimation.CalMaTe: a method and software to improve allele-specific copy number of SNP arrays for downstream segmentation.Monitoring of technical variation in quantitative high-throughput datasets Removing batch effects for prediction problems with frozen surrogate variable analysis.ICSBP promoter methylation in myelodysplastic syndromes and acute myeloid leukaemia.

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P2860

A multilevel model to address batch effects in copy number estimation using SNP arrays.

http://www.wikidata.org/entity/Q34425384

description

2010 nî lūn-bûn

@nan

2010 թուականի Յուլիսին հրատարակուած գիտական յօդուած

@hyw

2010 թվականի հուլիսին հրատարակված գիտական հոդված

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2010年の論文

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2010年論文

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2010年論文

@zh-hant

2010年論文

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2010年論文

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2010年論文

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2010年论文

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name

A multilevel model to address batch effects in copy number estimation using SNP arrays.

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A multilevel model to address batch effects in copy number estimation using SNP arrays.

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A multilevel model to address batch effects in copy number estimation using SNP arrays.

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type

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A multilevel model to address batch effects in copy number estimation using SNP arrays.

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A multilevel model to address batch effects in copy number estimation using SNP arrays.

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A multilevel model to address batch effects in copy number estimation using SNP arrays.

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prefLabel

A multilevel model to address batch effects in copy number estimation using SNP arrays.

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A multilevel model to address batch effects in copy number estimation using SNP arrays.

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A multilevel model to address batch effects in copy number estimation using SNP arrays.

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A multilevel model to address batch effects in copy number estimation using SNP arrays

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Aravinda Chakravarti

http://www.w3.org/2001/XMLSchema#string

Betty Doan

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Ingo Ruczinski

http://www.w3.org/2001/XMLSchema#string

Rafael A Irizarry

http://www.w3.org/2001/XMLSchema#string

Robert B Scharpf

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P2860

Mapping and sequencing of structural variation from eight human genomes

Structural variation of chromosomes in autism spectrum disorder

Global variation in copy number in the human genome

CARAT: a novel method for allelic detection of DNA copy number changes using high density oligonucleotide arrays.

Mapping autism risk loci using genetic linkage and chromosomal rearrangements.

Integrated detection and population-genetic analysis of SNPs and copy number variation

Assessing the significance of chromosomal aberrations in cancer: methodology and application to glioma

PLASQ: a generalized linear model-based procedure to determine allelic dosage in cancer cells from SNP array data.

A genome-wide investigation of SNPs and CNVs in schizophrenia.

Quantifying uncertainty in genotype calls

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33-50

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scholarly article

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10.1093/BIOSTATISTICS/KXQ043

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1

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12

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Benilton Carvalho

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2010-07-12T00:00:00Z

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45167574

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20625178

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3006124

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