CLARK: fast and accurate classification of metagenomic and genomic sequences using discriminative k-mers. - Test2 - elhamkhani - TriplyDB

CLARK: fast and accurate classification of metagenomic and genomic sequences using discriminative k-mers.

CLARK: fast and accurate classification of metagenomic and genomic sequences using discriminative k-mers.

http://www.wikidata.org/entity/Q34471973

about

Web Resources for Metagenomics Studies Application of metagenomic sequencing to food safety: detection of Shiga Toxin-producing Escherichia coli on fresh bagged spinach.SUPER-FOCUS: a tool for agile functional analysis of shotgun metagenomic data k-SLAM: accurate and ultra-fast taxonomic classification and gene identification for large metagenomic data sets Metagenomic Approaches to Assess Bacteriophages in Various Environmental Niches.Construction of a map-based reference genome sequence for barley, Hordeum vulgare L StrainSeeker: fast identification of bacterial strains from raw sequencing reads using user-provided guide trees.Towards diagnostic metagenomics of Campylobacter in fecal samples.Insights into study design and statistical analyses in translational microbiome studies Characterization of the Gut Microbiome Using 16S or Shotgun Metagenomics Higher classification sensitivity of short metagenomic reads with CLARK-S.rasbhari: Optimizing Spaced Seeds for Database Searching, Read Mapping and Alignment-Free Sequence Comparison Evaluation of shotgun metagenomics sequence classification methods using in silico and in vitro simulated communities.A novel semi-supervised algorithm for the taxonomic assignment of metagenomic reads An evaluation of the accuracy and speed of metagenome analysis tools.RiboFR-Seq: a novel approach to linking 16S rRNA amplicon profiles to metagenomes.Unbiased probabilistic taxonomic classification for DNA barcoding.Metagenomic covariation along densely sampled environmental gradients in the Red Sea.Scalable metagenomics alignment research tool (SMART): a scalable, rapid, and complete search heuristic for the classification of metagenomic sequences from complex sequence populations.WEVOTE: Weighted Voting Taxonomic Identification Method of Microbial Sequences Comparing genome versus proteome-based identification of clinical bacterial isolates.Accelerating metagenomic read classification on CUDA-enabled GPUs.Assessment of Common and Emerging Bioinformatics Pipelines for Targeted Metagenomics Ancient plant DNA in lake sediments.Bioinformatics tools for quantitative and functional metagenome and metatranscriptome data analysis in microbes.Fast and sensitive taxonomic classification for metagenomics with Kaiju Draft Genome Sequence of Cylindrospermopsis raciborskii (Cyanobacteria) Strain ITEP-A1 Isolated from a Brazilian Semiarid Freshwater Body: Evidence of Saxitoxin and Cylindrospermopsin Synthetase Genes.Taxonomer: an interactive metagenomics analysis portal for universal pathogen detection and host mRNA expression profiling.Sequencing of 15 622 gene-bearing BACs clarifies the gene-dense regions of the barley genome.Significant loss of sensitivity and specificity in the taxonomic classification occurs when short 16S rRNA gene sequences are used Metagenomic analysis of medicinal Cannabis samples; pathogenic bacteria, toxigenic fungi, and beneficial microbes grow in culture-based yeast and mold tests.Alignment-free Transcriptomic and Metatranscriptomic Comparison Using Sequencing Signatures with Variable Length Markov Chains.Origin of microbial biomineralization and magnetotaxis during the Archean PhyloPythiaS+: a self-training method for the rapid reconstruction of low-ranking taxonomic bins from metagenomes.MetaPalette: a k-mer Painting Approach for Metagenomic Taxonomic Profiling and Quantification of Novel Strain Variation.Association of coral algal symbionts with a diverse viral community responsive to heat shock MetaMeta: integrating metagenome analysis tools to improve taxonomic profiling.A clinician's guide to microbiome analysis.VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data Intriguing Interaction of Bacteriophage-Host Association: An Understanding in the Era of Omics

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CLARK: fast and accurate classification of metagenomic and genomic sequences using discriminative k-mers.

http://www.wikidata.org/entity/Q34471973

description

2015 nî lūn-bûn

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2015 թուականի Մարտին հրատարակուած գիտական յօդուած

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2015 թվականի մարտին հրատարակված գիտական հոդված

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2015年の論文

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2015年論文

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2015年論文

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CLARK: fast and accurate class ...... s using discriminative k-mers.

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CLARK: fast and accurate class ...... s using discriminative k-mers.

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CLARK: fast and accurate class ...... s using discriminative k-mers.

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CLARK: fast and accurate class ...... s using discriminative k-mers.

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CLARK: fast and accurate class ...... s using discriminative k-mers.

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CLARK: fast and accurate class ...... es using discriminative k-mers

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Stefano Lonardi

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Steve Wanamaker

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Timothy J Close

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A physical, genetic and functional sequence assembly of the barley genome

Metagenomic microbial community profiling using unique clade-specific marker genes

A framework for human microbiome research

Chromosomes in the flow to simplify genome analysis

Structure, function and diversity of the healthy human microbiome

MEGAN analysis of metagenomic data

BLAT--the BLAST-like alignment tool

Basic local alignment search tool

Combinatorial pooling enables selective sequencing of the barley gene space

Environmental genome shotgun sequencing of the Sargasso Sea

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